Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0030.Seq
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   2.3  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   4.1  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   4.1  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    24   9.5  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    24   9.5  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   9.5  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    24   9.5  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 75  KSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKS 191
           KS   +  + +   S T   S H RP+P+ +TA S + S
Sbjct: 244 KSRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANSSSAS 282


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 69  RWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKS 191
           ++  +P+ T+    +TSE++   T  RPA   +  T+ A S
Sbjct: 163 KFSPNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRASS 203


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 69  RWKSSPSITASAHRA-TSETTWASTHRRPAPRWSTATSHAKSN 194
           R  S  +I  +  R+ TS  T +   R    RWS+ +SH+K +
Sbjct: 465 RSSSQSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKS 507


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 60  LRSRWKSSPSITASA---HRATSETTWASTHRRP 152
           L S+ K++PSITA A     A S+ ++ S + RP
Sbjct: 331 LDSKEKNTPSITAKAGSPQSAPSKASYISPYARP 364


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 57  SLRSRWKSSPSITASAHRATSETTWAST 140
           +L S W +  +      RATS +TW S+
Sbjct: 131 TLASSWPTCIAYVVDTPRATSTSTWMSS 158


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 314 CSCFQEPANDGRPT 273
           CSCFQ+ + D +PT
Sbjct: 27  CSCFQDASIDEKPT 40


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 66  SRWKSSPSITASAHRATSETT 128
           SRWKSS S  A AH    E T
Sbjct: 65  SRWKSSSSGFAPAHPPIEEPT 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,080
Number of Sequences: 5004
Number of extensions: 30165
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)