Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0030.Seq
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0659 + 30679809-30680253,30680699-30680715,30682373-306825...    29   1.7  
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752...    29   2.3  
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574...    29   2.3  
11_06_0380 + 22937941-22937984,22939375-22941481                       28   3.1  
08_01_0386 + 3424561-3425346                                           27   5.3  
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88...    27   5.3  
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    27   9.3  
03_01_0534 + 3996479-3997458,3997938-3998265                           27   9.3  

>02_05_0659 +
           30679809-30680253,30680699-30680715,30682373-30682530,
           30682570-30682846
          Length = 298

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 63  RSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATS 179
           R  W+S+PS   +  R+T+    A  ++RP PR + A S
Sbjct: 10  RFLWRSTPSPHPALGRSTTPPHAARWYKRPLPRTAAAAS 48


>12_01_0818 +
           7524549-7524747,7524855-7525863,7525964-7526108,
           7526206-7526295,7526404-7526553,7527333-7528094,
           7528177-7528496,7528581-7528707,7528792-7528959,
           7529054-7530466,7530563-7530823,7530983-7531144,
           7531976-7532121,7532601-7532667,7533483-7533587
          Length = 1707

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 33  GRYWMWTRSLRSRWKSSPSITASA 104
           GR WMWTR LR   K +  +  S+
Sbjct: 829 GRIWMWTRCLRCNGKPTQRVIISS 852


>09_02_0203 -
           5746068-5746307,5746469-5746729,5746833-5748239,
           5748588-5748714,5748800-5749119,5749202-5749963,
           5750749-5750898,5751007-5751096,5751196-5751340,
           5751440-5751617,5751753-5752448,5752555-5752753
          Length = 1524

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 33  GRYWMWTRSLRSRWKSSPSITASA 104
           GR WMWTR LR   K +  +  S+
Sbjct: 784 GRIWMWTRCLRCNGKPTQRVIISS 807


>11_06_0380 + 22937941-22937984,22939375-22941481
          Length = 716

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 9   RWCTTRLNGRYWMWTRSLRSRWKSSPSITASAHRATS 119
           RW  +R  G++ +W  +  +   S P+    AHRA S
Sbjct: 483 RWDFSRFQGQWALWVANRVNGGDSDPAALGPAHRALS 519


>08_01_0386 + 3424561-3425346
          Length = 261

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 78  SSPSITASAHRATSETTWASTH 143
           SSP+  ASA  A S   WAS H
Sbjct: 23  SSPAAAASASPAASAVVWASNH 44


>06_01_0113 +
           886899-886906,887029-887107,887390-887458,887547-887636,
           887725-887863,888466-888568,888664-888716,888801-888867,
           889147-889255,889499-889567,889676-889745,889833-889952,
           890052-890201,890611-890873
          Length = 462

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 84  PSITASAHRATSETTWASTHRRPAPRWSTATSHAKSNPF 200
           PS+ +         T  +T +RP P   T T HA ++PF
Sbjct: 405 PSLASDKFVDMKARTHGNTMKRPLPPVGTRTWHAPADPF 443


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 390 FFVVVLILRDIRSWYAIDIVIYN 322
           +F+V+  +RD  +W AI++ ++N
Sbjct: 175 YFIVIDDVRDAEAWKAIELALFN 197


>03_01_0534 + 3996479-3997458,3997938-3998265
          Length = 435

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 84  PSITASAHRATSETTWASTHRRPAPRWSTATSHAKSNPFTY 206
           P++ ++      E  WA+ +R   PRW + +  A +   TY
Sbjct: 276 PTLKSTVRGLLKEGGWAACYRGLGPRWGSMSLSAATMVTTY 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,519,201
Number of Sequences: 37544
Number of extensions: 215754
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)