Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0030.Seq
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 31 0.59
SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4) 29 1.4
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 29 2.4
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 29 2.4
SB_20023| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-25) 28 3.1
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_35732| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7) 27 7.3
SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 27 7.3
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41) 27 9.6
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 30.7 bits (66), Expect = 0.59
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 78 SSPSITASAHRATSET---TWASTHRRPAPRWSTATSHAKSNP 197
S+ + AH+ +++T T +++RP R S AT H KS+P
Sbjct: 605 SASLVPVQAHQTSAKTVDQTAIGSNKRPGKRTSPATGHGKSSP 647
>SB_57163| Best HMM Match : 3HCDH_N (HMM E-Value=2.4)
Length = 303
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 6 WRWCTTRLNGRYWMWTRSLRSRW 74
WRW R NG+ W + + R W
Sbjct: 235 WRWVCRRRNGKCWAYKKQRRMGW 257
>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 1139
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T+S L SR + +P + T + HR +T S+ +RPAP +T T+H
Sbjct: 840 TTITNHRLNCHTKSVILSSRKRPAPITTTITNHRLNCQTNSVILSSRKRPAPITTTITNH 899
Score = 27.5 bits (58), Expect = 5.5
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR +T S+ +RPAP +T T+H
Sbjct: 230 TTITNHRLNCHTSSVILSSRKRPAPITTTITNHRLNCQTNSVILSSRKRPAPITTTITNH 289
Score = 27.5 bits (58), Expect = 5.5
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T+ S+ +RPAP +T T+H
Sbjct: 257 TTITNHRLNCQTNSVILSSRKRPAPITTTITNHRLNCHTSSVILSSRKRPAPITTTITNH 316
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 456 TTITNHRLNCHTNSGILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 515
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 604 TTITNHRLNCHTNSGILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 663
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 631 TTITNHRLNCHTNSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 690
Score = 26.6 bits (56), Expect = 9.6
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 284 TTITNHRLNCHTSSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 343
Score = 26.6 bits (56), Expect = 9.6
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 370 TTITNHRLNCHTSSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 429
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +3
Query: 63 RSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
RSR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 535 RSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 577
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 218 LFPSFLVVHRVLPTETTIWWAFHH*RALGN 307
+F S +HR LP +T WW+ H GN
Sbjct: 340 IFDSQAWMHRCLPGDTRYWWSRCHCSKAGN 369
>SB_20023| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-25)
Length = 548
Score = 28.3 bits (60), Expect = 3.1
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P S T + HR T S+ +RPAP +T T+H
Sbjct: 464 TTITNHRLNCHTNSVILSSRKRPAPISTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 523
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 302 TTITNHRLNRHTNSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 361
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 329 TTITNHRLNCHTNSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 388
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 356 TTITNHRLNCHTNSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 415
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 383 TTITNHRLNCHTNSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 442
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 18 TTRLNGRYWMWTRS--LRSRWKSSP-SITASAHRATSETTWA--STHRRPAPRWSTATSH 182
TT N R T S L SR + +P + T + HR T S+ +RPAP +T T+H
Sbjct: 410 TTITNHRLNCHTNSVILSSRKRPAPITTTITNHRLNCHTNSVILSSRKRPAPITTTITNH 469
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Frame = +3
Query: 72 WKSSPSITASAHR---------ATSETTWASTHRRPAPRWST-ATSHAKSNP 197
W SSP A+ H AT W S+ + PA R + ATSH P
Sbjct: 829 WTSSPQSPATLHNARTSSPQSPATRHNAWTSSPQSPATRHNAQATSHQAQEP 880
>SB_35732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +3
Query: 66 SRWKSSPSITASAHRATSETTWASTH------RRPAPRWSTATSHAKS 191
S W+ SI A+ H A+ + + + RP PRWS+ + +++S
Sbjct: 34 SPWRREDSINANPHEASRSASNSCSPGDPLVLERPPPRWSSNSPYSES 81
>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
Length = 464
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +2
Query: 164 VHRDLSCQIQPVHVHRNXLFPSFLVVHRVLPTETTIWWAFH 286
VHR LS I VHVHR+ L + + VHR L TTI + H
Sbjct: 346 VHRSLSITI--VHVHRS-LSITIVHVHRSL--STTIVYVHH 381
>SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 1045
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 96 ASAHRATSETTWASTHRRPAPRWSTATSHAKSNPFTYI 209
ASA + TW H+ +PR++ A A++ + Y+
Sbjct: 1000 ASAEFSVFAKTWMFEHKTSSPRYAQANGKAENAVYLYL 1037
>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
Length = 1515
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 170 RDLSCQ--IQPVHVHRNXLFPSFLVVHRVLPTETTIW 274
RD++C + P HV+R+ F + +LP T +W
Sbjct: 1113 RDIACMDDLLPNHVYRSFSLCLFSLSALILPAGTNVW 1149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,322
Number of Sequences: 59808
Number of extensions: 241386
Number of successful extensions: 2158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2155
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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