Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0030.Seq
         (454 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain contai...    29   7.4  
DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat ...    29   7.4  
DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein.     29   7.4  
DQ228004-1|ABB59560.1| 1144|Homo sapiens TRIOBP isoform 4 protein.     29   7.4  
DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein.     29   7.4  

>Z83844-7|CAI20371.1| 2193|Homo sapiens protein ( S domain
           containing protein  ).).
          Length = 2193

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 51  TRSLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSNPFT 203
           T S   R     S T+S +RAT +    S  +R  PR S+    A+ NP T
Sbjct: 329 TTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPNRAARDNPTT 379


>DQ278603-1|ABB77204.1| 2266|Homo sapiens trio-associated repeat on
           actin protein.
          Length = 2266

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 51  TRSLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSNPFT 203
           T S   R     S T+S +RAT +    S  +R  PR S+    A+ NP T
Sbjct: 501 TTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPNRAARDNPTT 551


>DQ228005-1|ABB59561.1| 2365|Homo sapiens TRIOBP isoform 6 protein.
          Length = 2365

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 51  TRSLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSNPFT 203
           T S   R     S T+S +RAT +    S  +R  PR S+    A+ NP T
Sbjct: 501 TTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPNRAARDNPTT 551


>DQ228004-1|ABB59560.1| 1144|Homo sapiens TRIOBP isoform 4 protein.
          Length = 1144

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 51  TRSLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSNPFT 203
           T S   R     S T+S +RAT +    S  +R  PR S+    A+ NP T
Sbjct: 329 TTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPNRAARDNPTT 379


>DQ228003-1|ABB59559.1| 2193|Homo sapiens TRIOBP isoform 3 protein.
          Length = 2193

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 51  TRSLRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSNPFT 203
           T S   R     S T+S +RAT +    S  +R  PR S+    A+ NP T
Sbjct: 329 TTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPNRAARDNPTT 379


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,319,281
Number of Sequences: 237096
Number of extensions: 1202732
Number of successful extensions: 2369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2369
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)