Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0030.Seq
         (454 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p pro...    28   5.1  
AY113616-1|AAM29621.1|  112|Drosophila melanogaster RH63170p pro...    28   5.1  
AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB ...    28   5.1  

>AY118621-1|AAM49990.1| 1168|Drosophila melanogaster RE03558p
           protein.
          Length = 1168

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 51  TRSLRSRWKSSPSITASAHRATSETTWASTHRRPA-PRWSTATSHAKSNPFTY 206
           TR   +     P+ T +   AT+ TT ++T   P  P  +T  +   +N FTY
Sbjct: 428 TRKTTTTTTPKPTTTTTTTEATTTTTTSTTTTTPPLPPSTTRATTTSTNTFTY 480


>AY113616-1|AAM29621.1|  112|Drosophila melanogaster RH63170p
           protein.
          Length = 112

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +3

Query: 6   WRWCTTRLNGRYWMWTRSLRSRWKSSPSI-TASAHRATSETTWASTHR 146
           W W TT      W W+  +R+RWK    I T     A   T W    R
Sbjct: 32  WLW-TTGWTRPGWTWSARIRTRWKWPTRIRTGWTRPARIRTGWTRPAR 78


>AE014296-813|AAF47875.2| 1168|Drosophila melanogaster CG1273-PB
           protein.
          Length = 1168

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 51  TRSLRSRWKSSPSITASAHRATSETTWASTHRRPA-PRWSTATSHAKSNPFTY 206
           TR   +     P+ T +   AT+ TT ++T   P  P  +T  +   +N FTY
Sbjct: 428 TRKTTTTTTPKPTTTTTTTEATTTTTTSTTTTTPPLPPSTTRATTTSTNTFTY 480


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,527
Number of Sequences: 53049
Number of extensions: 345436
Number of successful extensions: 850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1476622287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)