Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0030.Seq
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73897-3|CAE18053.1|  178|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical ...    28   2.8  
AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical ...    28   2.8  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U64839-1|AAB04844.2|  399|Caenorhabditis elegans Acyltransferase...    27   4.8  

>Z73897-3|CAE18053.1|  178|Caenorhabditis elegans Hypothetical
           protein ZK617.4 protein.
          Length = 178

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 60  LRSRWKSSPSITASAHRATSETTWASTHRRPAPRWSTATSHAKSNP 197
           L++  K S S   S H A+  ++ +S+ RR  PR    +SH+ S+P
Sbjct: 9   LQNLLKKSASNDGSDHGASPSSSTSSSSRRLPPRPPLESSHSASSP 54


>AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK355.2a protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = +3

Query: 42  WMWTRSLRSRWK-SSPSITASAHRATSETTWASTHRRPAPR---------WSTATSHAKS 191
           W      RS+ K  S S   SA  +T+ +TW+S H R   R         W  AT+H+ S
Sbjct: 289 WAILYVFRSKTKLRSDSDEDSAESSTASSTWSSNHSRNNVRIADVITVRNWRRATAHSPS 348

Query: 192 NP 197
            P
Sbjct: 349 LP 350


>AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical
           protein ZK355.2b protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = +3

Query: 42  WMWTRSLRSRWK-SSPSITASAHRATSETTWASTHRRPAPR---------WSTATSHAKS 191
           W      RS+ K  S S   SA  +T+ +TW+S H R   R         W  AT+H+ S
Sbjct: 299 WAILYVFRSKTKLRSDSDEDSAESSTASSTWSSNHSRNNVRIADVITVRNWRRATAHSPS 358

Query: 192 NP 197
            P
Sbjct: 359 LP 360


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 108 RATSETTWASTHRRPAPRWS-TATSHAKSNP 197
           R++S   W+ST R+  PRWS    S ++ +P
Sbjct: 542 RSSSNLGWSSTTRKVYPRWSENEVSASRQDP 572


>U64839-1|AAB04844.2|  399|Caenorhabditis elegans
           Acyltransferase-like protein 9 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 109 RCAEAVIEGEDFHLDRKDLVHIQYLPLSRVVHHLHV 2
           +C +A  E    H ++K LVH QY+   RV   +H+
Sbjct: 187 KCPKAT-ERSRIHSEKKGLVHYQYVLHPRVTGFVHI 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,338,959
Number of Sequences: 27780
Number of extensions: 171626
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)