Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0030.Seq
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   2.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   2.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   3.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 313 ALVSKSPLMMEGPPNRGFRGEDAVDH 236
           A++  S  + E    R F G D+VDH
Sbjct: 288 AILGHSGFLCERHQKRYFFGRDSVDH 313


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 150 PAPRWSTATSHAKS 191
           P+P W T T  AK+
Sbjct: 132 PSPEWDTVTPEAKN 145


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 138 THRRPAPRWSTATSHAKSNP 197
           T  RPA  + TATSH  S P
Sbjct: 23  TSHRPAWWFWTATSHEASAP 42


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 404 FCDCLSLSLYSFYAILD 354
           +C+  SLS+  F A+LD
Sbjct: 540 YCNLFSLSVDHFNAVLD 556


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 404 FCDCLSLSLYSFYAILD 354
           +C+  SLS+  F A+LD
Sbjct: 508 YCNLFSLSVDHFNAVLD 524


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 283 PSLAGSWKQEQVKIIYYD 336
           P+L   WK E+++ IY +
Sbjct: 489 PNLLEGWKVEKIQEIYLE 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,364
Number of Sequences: 438
Number of extensions: 2403
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)