Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0029.Seq
         (748 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n...    41   0.037
UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep: Lipo...    38   0.35 
UniRef50_P45590 Cluster: Larval/pupal rigid cuticle protein 66 p...    34   4.3  
UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2 transc...    33   5.6  

>UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n=1;
           Allochromatium vinosum|Rep: Sulfur globule protein CV1
           precursor - Chromatium vinosum (Allochromatium vinosum)
          Length = 127

 Score = 40.7 bits (91), Expect = 0.037
 Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 394 APYGIAAPYGIAAPYTAYGA-YGVAPYG 474
           APYG  APYG  APY  YGA YG  PYG
Sbjct: 82  APYGYGAPYGYGAPY-GYGAPYGAMPYG 108



 Score = 37.9 bits (84), Expect = 0.26
 Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 394 APYGIAAPYGIAAPYTAYGA-YGV-APYG 474
           APYG  APYG  APY  YGA YG  APYG
Sbjct: 76  APYGYGAPYGYGAPY-GYGAPYGYGAPYG 103



 Score = 35.5 bits (78), Expect = 1.4
 Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 400 YGIAAPYGIAAPYTAYGA-YGV-APYGLG 480
           YG  APYG  APY  YGA YG  APYG G
Sbjct: 72  YGYGAPYGYGAPY-GYGAPYGYGAPYGYG 99


>UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep:
           Lipocalin-2 - Lonomia obliqua (Moth)
          Length = 53

 Score = 37.5 bits (83), Expect = 0.35
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +2

Query: 179 EGHARAAEAVVQHNTEAVRQAAEAS 253
           + HARA EA VQ+NT+A RQ AEA+
Sbjct: 16  QDHARAVEAAVQYNTDATRQVAEAN 40


>UniRef50_P45590 Cluster: Larval/pupal rigid cuticle protein 66
           precursor; n=1; Hyalophora cecropia|Rep: Larval/pupal
           rigid cuticle protein 66 precursor - Hyalophora cecropia
           (Cecropia moth)
          Length = 129

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 376 ASPLVTAPYGIAAPYGIAAPY 438
           A+P +TAPYG A PY   +PY
Sbjct: 85  AAPYITAPYGYAVPYAYTSPY 105


>UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2
           transcription factor related, locus 6; n=1; Canis lupus
           familiaris|Rep: PREDICTED: similar to NK2 transcription
           factor related, locus 6 - Canis familiaris
          Length = 342

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 415 PYGI-AAPYTAYGAYGVAPYGLG 480
           PYG  AAPY+ YG Y  AP+G G
Sbjct: 274 PYGAPAAPYSCYGGYAGAPFGAG 296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,658,669
Number of Sequences: 1657284
Number of extensions: 5618048
Number of successful extensions: 15115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15065
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)