Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0026.Seq
         (830 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         27   0.24 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.2  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   6.9  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 335 INSKNLPRRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHKP 460
           +NSK+LPR+ S  R +  Q   +   K   E   +R+  ++P
Sbjct: 194 LNSKSLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRP 235


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 461  VVHTSVCEMTEIKIGLNHAYLIKFFKIN 544
            + H     + E++  +   YL+KF+K++
Sbjct: 1012 ICHVCYATIQEVRAKIYFFYLVKFYKVS 1039



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 519 TSLSFLK*IV*YLIFVLFLTLWLYKI 596
           + L  L  I+  ++FV F++ WLY +
Sbjct: 39  SKLLILYNIILQVLFVSFVSYWLYLV 64


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 461 VVHTSVCEMTEIKIGLNHAYLIKFFKIN 544
           + H     + E++  +   YL+KF+K++
Sbjct: 293 ICHVCYATIQEVRAKIYFFYLVKFYKVS 320


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 519 TSLSFLK*IV*YLIFVLFLTLWLYKI 596
           + L  L  I+  ++FV F++ WLY +
Sbjct: 57  SKLLILYNIILQVLFVSFVSYWLYLV 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,979
Number of Sequences: 336
Number of extensions: 3362
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)