Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0026.Seq
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 29 0.81
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 27 2.5
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 27 3.3
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 27 4.3
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 4.3
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 27 4.3
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 5.7
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 26 7.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 10.0
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 525 LSFLK*IV*YLIFVLFLTLWLYKISFLAFXI 617
L+++ ++ Y IFV+F+ +W+Y +L F I
Sbjct: 268 LNYVNTVIVYPIFVIFVFVWIYMRHYLNFKI 298
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 245 RRRYHVQCLSPLKLEQPVK*TMTGYLKKL*INSKNLPRR--RSSRRAQGKQRDQQATTKK 418
RRR V+ P KL +P K + K+ + K RR R S++ K + +A+
Sbjct: 495 RRRLEVEKTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNL 554
Query: 419 SFEVMIK 439
E++ K
Sbjct: 555 KQEIVSK 561
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +1
Query: 109 RVQPDTQHCGSIRRSRWRD--ILLICLPWC-----WWSVGSRRRTASPRFIGQT*IPRSV 267
++ P Q+CG+I+ + WR+ + I L C +W + RR+ PR + T
Sbjct: 346 KIPPYCQNCGTIKTANWRNATYMNITLMLCNACGIYW---TSRRSMRPRNLWSTYKAFET 402
Query: 268 SQPVETGTASEVD 306
+P+E ++++
Sbjct: 403 EKPLENDAFAQLE 415
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 353 PRRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHKPVV-HTSVCEMTEIKIGLNHAYLIK 529
P ++ A + + A ++K+ E+ R+ ++ H +CE ++ I +H Y++
Sbjct: 161 PDITKAKAAASAEATKAAQSEKNKEIRTVREAALSTLLRHPYICEARDVYITNSHYYMVF 220
Query: 530 FFKINSLIFDFCI 568
F + D+ I
Sbjct: 221 EFVDGGQMLDYII 233
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 301 VDYDWLPKEIVNQLKKSPKTPKQSP 375
VD WLPK ++ LKKS ++P
Sbjct: 374 VDQLWLPKRSLSALKKSSSLTSENP 398
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 205 GSRRRTASPRFIGQT*IPRSVSQPV--ETGTASEVDYDWLPKEIVNQLKKS 351
G++++ +P +G+ + V +P +TG+A D K IV QLK +
Sbjct: 5 GNKKKQEAPLSLGKHTVGGRVGKPTNAKTGSALTSDKSLFDKRIVKQLKNN 55
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 344 KNLPRRRSSRRAQGKQRDQQATTKKS 421
KNLPR + S Q KQ Q +++KS
Sbjct: 95 KNLPRNQKSNEIQEKQTFQTPSSEKS 120
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 95 SAATTNTKHKPRSSSR*PVAVKEAKVLKRGG 3
S ++TKH P+S+ R PV E+++ + G
Sbjct: 198 SPPLSSTKHAPQSTERRPVRRSESRLKQTNG 228
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 104 ALKSAATTNTKHKPRSSSR*PVAVKEA 24
A+ + T+N H P SSS P+ +K A
Sbjct: 123 AVSPSDTSNLLHPPTSSSSIPIPIKNA 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,532
Number of Sequences: 5004
Number of extensions: 55877
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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