Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0026.Seq
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0214 + 15487367-15487388,15488220-15488375,15488690-154889...    33   0.37 
05_03_0607 - 16149180-16149617,16149795-16150100                       30   2.6  
12_01_0893 + 8650967-8651311                                           29   6.0  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   7.9  

>03_03_0214 +
           15487367-15487388,15488220-15488375,15488690-15488925,
           15489013-15489132,15490466-15490480
          Length = 182

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 266 CLSPLKLEQPVK*TMTGYLKKL*INSKNLPRRRSSRRAQGKQRDQQATTKKS 421
           C + + +++P        LKK    ++NL R RS     G +R +Q+TTKK+
Sbjct: 86  CAARVDVQEPNVSLTNASLKKKEFRTRNLKRNRSWTDKNGTRRKKQSTTKKT 137


>05_03_0607 - 16149180-16149617,16149795-16150100
          Length = 247

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 274 PVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
           P +   +   D D+LP+E  N+   S K PK S +  K KR   DD
Sbjct: 128 PSDVDPSLHYDSDYLPEENNNRSSSSSKRPKGS-KIDKGKRVKADD 172


>12_01_0893 + 8650967-8651311
          Length = 114

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +1

Query: 184 PW---CWWSVGSRRRTASPRFI-GQT*IPRSV 267
           PW   CWW + S RR   PR + G+  +P+++
Sbjct: 52  PWRCACWWCLTSPRRVVPPRLVDGKPRLPQTL 83


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 356 RRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHK 457
           RR +SR     QR    T  + +EV ++R+ KH+
Sbjct: 343 RRGASRYTDNNQRSDWRTEDRDYEVDVRREGKHR 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,775,580
Number of Sequences: 37544
Number of extensions: 340742
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)