Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0026.Seq
         (830 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-7|CAJ14158.1|  284|Anopheles gambiae signal sequence re...    56   1e-09
Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.             25   2.8  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   6.5  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    23   8.6  
AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine dehydroge...    23   8.6  

>CR954257-7|CAJ14158.1|  284|Anopheles gambiae signal sequence
           receptor protein.
          Length = 284

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = +1

Query: 256 PRSVSQPVETGTAS--EVDYDWLPKEIVNQLKKSPK-----TPKQSPRARKAK 393
           P +  + VETGTAS  +VDY+W+P E + QL+ SPK     +PKQSPR RKAK
Sbjct: 230 PTAARKVVETGTASTKDVDYEWIPSETLKQLQNSPKGAPKSSPKQSPRQRKAK 282



 Score = 44.8 bits (101), Expect = 3e-06
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = +2

Query: 101 TRCAYNQTLNIVEVSEGLDGETFFLYVF 184
           +   +N+T+ I EV EGLDGETFFLYVF
Sbjct: 178 SEAVFNETVQITEVDEGLDGETFFLYVF 205


>Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.
          Length = 124

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 209 EPTLHQHQGRHIRRMSLHLDLRILPQC*VSGCTRN 105
           EP +H H  RH+R ++   D  +L      GC R+
Sbjct: 5   EPLVHHHL-RHLRVLAAAADHHLLVHLHPEGCVRS 38


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 371 RRAQGKQRDQQATTKKSFEVMIKRDIKHKPVVHTSVCEMTEIK 499
           ++A+ +QR +    K+  E+M +    HK +V     EM + +
Sbjct: 863 KQAEARQRQEIEKDKEKIELMKQEKAAHKTLVDQMEEEMAKAR 905


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 359 RRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHKPVVHTSVCEMTE 493
           +R    A+  +  + A +K+ F      + +H P VH+  C  T+
Sbjct: 334 KRPPGEAENSRDQRMAKSKRKFSQQNCCEQQHLPHVHSEKCAGTQ 378


>AF515734-1|AAO14865.1| 1325|Anopheles gambiae xanthine
           dehydrogenase protein.
          Length = 1325

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 98  LTRCAYNQTLNIVEVSE 148
           LTRCA+   +  VEVS+
Sbjct: 64  LTRCAFTDAVTTVEVSK 80


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,779
Number of Sequences: 2352
Number of extensions: 13652
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)