Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0026.Seq
(830 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 47 7e-05
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 47 7e-05
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 47 7e-05
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 47 7e-05
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 47 7e-05
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 47 7e-05
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 47 7e-05
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 47 7e-05
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 47 7e-05
BC031482-1|AAH31482.1| 989|Homo sapiens C10orf12 protein protein. 31 6.8
BC024315-1|AAH24315.1| 1247|Homo sapiens chromosome 10 open read... 31 6.8
AL442123-2|CAH70916.1| 1247|Homo sapiens chromosome 10 open read... 31 6.8
AK023084-1|BAB14396.1| 914|Homo sapiens protein ( Homo sapiens ... 31 6.8
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 239 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 190 FNQTVTVIEREDGLDGETIFMYMF 213
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 239 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 190 FNQTVTVIEREDGLDGETIFMYMF 213
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 239 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 190 FNQTVTVIEREDGLDGETIFMYMF 213
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 239 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 190 FNQTVTVIEREDGLDGETIFMYMF 213
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 239 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 190 FNQTVTVIEREDGLDGETIFMYMF 213
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 239 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 190 FNQTVTVIEREDGLDGETIFMYMF 213
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 239 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 190 FNQTVTVIEREDGLDGETIFMYMF 213
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 212 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 258
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 163 FNQTVTVIEREDGLDGETIFMYMF 186
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 47.2 bits (107), Expect = 7e-05
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 271 QPVETGTASE--VDYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 411
Q VE GT+S+ VD W+P+E +NQ+ K+ +P++ PR R KRS G D
Sbjct: 239 QKVEMGTSSQNDVDMSWIPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Score = 37.9 bits (84), Expect = 0.045
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
+NQT+ ++E +GLDGET F+Y+F
Sbjct: 190 FNQTVTVIEREDGLDGETIFMYMF 213
>BC031482-1|AAH31482.1| 989|Homo sapiens C10orf12 protein protein.
Length = 989
Score = 30.7 bits (66), Expect = 6.8
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 184 PWCWWSVGSRRRTASPRFIGQT*IPRSVSQPVETGTASEVDYDWLPKEIVNQLKKSPKTP 363
P C + S P +G+ +S+S VE+G E++ D L KE ++P
Sbjct: 226 PQCSENQSSPMGLEPPMSLGKAEDNQSISAEVESGDTQELNVDPLLKESSTFTDENPSET 285
Query: 364 KQSPRARKAKRSAGDD*EV 420
++S A + G+D +V
Sbjct: 286 EESEAAGGIGKLEGEDGDV 304
>BC024315-1|AAH24315.1| 1247|Homo sapiens chromosome 10 open reading
frame 12 protein.
Length = 1247
Score = 30.7 bits (66), Expect = 6.8
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 184 PWCWWSVGSRRRTASPRFIGQT*IPRSVSQPVETGTASEVDYDWLPKEIVNQLKKSPKTP 363
P C + S P +G+ +S+S VE+G E++ D L KE ++P
Sbjct: 392 PQCSENQSSPMGLEPPMSLGKAEDNQSISAEVESGDTQELNVDPLLKESSTFTDENPSET 451
Query: 364 KQSPRARKAKRSAGDD*EV 420
++S A + G+D +V
Sbjct: 452 EESEAAGGIGKLEGEDGDV 470
>AL442123-2|CAH70916.1| 1247|Homo sapiens chromosome 10 open reading
frame 12 protein.
Length = 1247
Score = 30.7 bits (66), Expect = 6.8
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 184 PWCWWSVGSRRRTASPRFIGQT*IPRSVSQPVETGTASEVDYDWLPKEIVNQLKKSPKTP 363
P C + S P +G+ +S+S VE+G E++ D L KE ++P
Sbjct: 392 PQCSENQSSPMGLEPPMSLGKAEDNQSISAEVESGDTQELNVDPLLKESSTFTDENPSET 451
Query: 364 KQSPRARKAKRSAGDD*EV 420
++S A + G+D +V
Sbjct: 452 EESEAAGGIGKLEGEDGDV 470
>AK023084-1|BAB14396.1| 914|Homo sapiens protein ( Homo sapiens
cDNA FLJ13022 fis, clone NT2RP3000753, weakly similar to
NEUROFILAMENT TRIPLET H PROTEIN. ).
Length = 914
Score = 30.7 bits (66), Expect = 6.8
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 184 PWCWWSVGSRRRTASPRFIGQT*IPRSVSQPVETGTASEVDYDWLPKEIVNQLKKSPKTP 363
P C + S P +G+ +S+S VE+G E++ D L KE ++P
Sbjct: 59 PQCSENQSSPMGLEPPMSLGKAEDNQSISAEVESGDTQELNVDPLLKESSTFTDENPSET 118
Query: 364 KQSPRARKAKRSAGDD*EV 420
++S A + G+D +V
Sbjct: 119 EESEAAGGIGKLEGEDGDV 137
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,130,000
Number of Sequences: 237096
Number of extensions: 1960008
Number of successful extensions: 4702
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4693
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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