Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0026.Seq
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...    46   3e-05
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    30   2.3  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/43 (51%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +1

Query: 277 VETGTASEVDYDWLPKEIV-NQLKKSPKTPKQSPRARKAKRSA 402
           VE GT+SEVD++W+P++ V N+ K+SP T   SP+ARK+ + A
Sbjct: 216 VEQGTSSEVDFEWIPRDAVKNKEKRSPAT--VSPKARKSAKKA 256



 Score = 35.9 bits (79), Expect = 0.036
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 113 YNQTLNIVEVSEGLDGETFFLYVF 184
           YNQT+NI+E   G  GET FL++F
Sbjct: 162 YNQTINIMEDDSGFSGETGFLFIF 185


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
            C27H6.1 protein.
          Length = 1657

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 126  STLWKYPKV*MERHSSYMSSLVLVECWLSSQDSKPSLHWPDVDTTFSV 269
            S +W+ P++  + H++Y S L+     LSS D  P    P  D  F++
Sbjct: 1482 SLVWRIPRLPEKHHAAYKSHLLKCRFELSSFDLMPEEFLPRCDVDFTM 1529


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +1

Query: 211 RRRTASPRFIGQT*IPRSVSQPVETGTASEVDYDWLPKEIVNQLKKSPKTPKQSPRARKA 390
           +++T SPR   +    +  S+   +    E + D+ PK+ V   KKS K P     + + 
Sbjct: 407 KKKTKSPRKSSKKSAAKEESEEESSDNEEEEEVDYSPKKKVKSPKKSSKKPAAKVESEEP 466

Query: 391 KRSAGDD*EV 420
             +  ++ EV
Sbjct: 467 SDNEEEEEEV 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,081
Number of Sequences: 27780
Number of extensions: 322811
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)