Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0022.Seq
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1013 - 7931756-7935109                                           31   0.86 
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    29   4.6  
03_04_0040 - 16730622-16730873,16731005-16731340                       28   8.1  
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705     28   8.1  

>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 688 GYEPARHLHVHPSPEFSSPQRVSGHR 611
           G+EP R + +HP+P+  +P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904


>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
            4498179-4499263,4499351-4500296
          Length = 1264

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 359  HHEKSAYLSLAKGNPVPIPEPGSGTVS 439
            +HEKS++L  AK  P P P   SG  S
Sbjct: 1096 NHEKSSWLQTAKEQPAPPPSVTSGNPS 1122


>03_04_0040 - 16730622-16730873,16731005-16731340
          Length = 195

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 576 IWFGTRRAPHLRRCPDTLCGLENSGXGCTWRCRAG 680
           +W G  R P + RC D     E +G G    CR G
Sbjct: 128 VWVGLERRPGVERCRDG--EKEEAGGGARVHCRGG 160


>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
          Length = 1172

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 679 PARHLHVHPSPEFSSPQRVSGHRRKCGALRVPNHISLL*DSMELER 542
           P+ H  +H S     P+R    RR+CGAL +    +   D + + R
Sbjct: 18  PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,132,032
Number of Sequences: 37544
Number of extensions: 486898
Number of successful extensions: 1516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)