Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0022.Seq
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-8|CAB01151.2|  386|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL032646-2|CAA21677.1|  260|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF326937-1|AAG49387.1|  260|Caenorhabditis elegans 2P40 protein.       28   7.2  
Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z77657-8|CAB01151.2|  386|Caenorhabditis elegans Hypothetical
           protein F08H9.7 protein.
          Length = 386

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -3

Query: 633 RREYPDTAANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGPLAASSGHFGLPRRTLVFKD 454
           RR++ +++ N++ F FRT S      W     A+  T P   +  SG+F  P   L +  
Sbjct: 240 RRDF-ESSNNSISFVFRTDSSVTNKGWQLTWSAKPNTPPIKQSGQSGNFTSPNYPLNYDP 298

Query: 453 EGTIIETVPLP-GSGIGTGFP-FARER 379
               +  +  P G  I    P FA E+
Sbjct: 299 YSEQLYYITAPTGFQINVTIPDFATEK 325


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
            protein Y67D8A.1 protein.
          Length = 1020

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 353  HAHHEKSAYLSLAKGNPVPIPEPGSGTVS--IIVPSSLKTSVRRGNPKWPEDAAR 511
            H HH++     L    P+  PEP SGTV+   I PS L +S+        +++ R
Sbjct: 965  HHHHQQQQTPLLRLATPLT-PEPSSGTVTPRAITPSPLSSSLNTSGGGGQDESCR 1018


>AL032646-2|CAA21677.1|  260|Caenorhabditis elegans Hypothetical
           protein Y54E2A.3 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 354 CSATSRRALINKHCTSATCECVERDLHGKQ 265
           C AT    ++ KH T A  E +ER LH  +
Sbjct: 48  CGATRGDIIVMKHTTKALTELIERLLHSDE 77


>AF326937-1|AAG49387.1|  260|Caenorhabditis elegans 2P40 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 354 CSATSRRALINKHCTSATCECVERDLHGKQ 265
           C AT    ++ KH T A  E +ER LH  +
Sbjct: 48  CGATRGDIIVMKHTTKALTELIERLLHSDE 77


>Z81477-8|CAC70076.1|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 367 KICLSLSRERESGSYSGTRQRNRFNNRSLVFKNECSTG*PKVA*RRRQRSGKSF 528
           K  LS++ +R S     +  +N FNN   VFKN  S        +R  ++ K+F
Sbjct: 452 KASLSIATKRISDHVYNSTYQNSFNNLLGVFKNSTSAVDDMFVMKRHMKAMKNF 505


>AL117201-6|CAB55065.2|  739|Caenorhabditis elegans Hypothetical
           protein Y53H1C.3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 367 KICLSLSRERESGSYSGTRQRNRFNNRSLVFKNECSTG*PKVA*RRRQRSGKSF 528
           K  LS++ +R S     +  +N FNN   VFKN  S        +R  ++ K+F
Sbjct: 452 KASLSIATKRISDHVYNSTYQNSFNNLLGVFKNSTSAVDDMFVMKRHMKAMKNF 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,755,010
Number of Sequences: 27780
Number of extensions: 402064
Number of successful extensions: 1208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)