Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0022.Seq
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22390.1 68418.m02612 expressed protein                             29   3.8  
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-...    29   3.8  
At1g40129.1 68414.m04766 hypothetical protein                          29   5.1  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   6.7  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    28   8.9  

>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 502 RRQRSGKSFLFCLSVRVPWNPIEG 573
           R+  S KSFL  LS   PWNP +G
Sbjct: 15  RQDNSPKSFLDTLSSSSPWNPSKG 38


>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
           domain-containing protein weak similarity to SP|P45974
           Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
           {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
           domain
          Length = 413

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 348 ATSRRALINKHCTSATCEC---VERDLHGKQSGGFRF 247
           A S  A++N  CT+ T  C   +E DLH K++G   F
Sbjct: 34  AESTEAVLNLVCTTCTKPCRSKIESDLHTKRTGHTEF 70


>At1g40129.1 68414.m04766 hypothetical protein
          Length = 567

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 750 PLPTXILSTRGSSXWRPAADMGTNRRDISTYIXHLNFQVRREY 622
           P  T    TRG + WRP     TN R+IST+    +   R++Y
Sbjct: 342 PDATLPFKTRGCTLWRPIKK--TNDREISTHHMSQSRDPRKDY 382


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 629 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 531
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 637 SPQRVSGHRRKCGALRVPNHISLL*DSMELE 545
           SP  ++G    CG  +V NH++LL +S+ L+
Sbjct: 41  SPISITGFYGPCGHPQVSNHLTLLSESLPLD 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,632,848
Number of Sequences: 28952
Number of extensions: 370864
Number of successful extensions: 960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)