Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0021.Seq
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z75955-11|CAB00125.1|  412|Caenorhabditis elegans Hypothetical p...    26   9.5  

>Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical
           protein C40H1.9 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 156 NYQISNFNTKI-LKL*VITSIDIPYDCHFFYTALLWLRHAAH 278
           N    + +TKI L+L   T   +PYD HF  T +L L  A+H
Sbjct: 43  NSSFVSCSTKISLQLNCPTKPKVPYDEHFARTQMLALASASH 84


>Z75955-11|CAB00125.1|  412|Caenorhabditis elegans Hypothetical
           protein R07B7.16 protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 174 NLKFDNFRIYNITVLHNNKTDIMCREGKHTAL 79
           N  FD+ RI N+T + N    ++C    H+AL
Sbjct: 186 NPVFDSSRIPNLTPVSNKAPKLICMTYMHSAL 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,656,662
Number of Sequences: 27780
Number of extensions: 149369
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)