Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0015.Seq
         (476 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    62   8e-09
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    34   1.4  
UniRef50_Q81XZ5 Cluster: Prophage LambdaBa01, N-acetylmuramoyl-L...    31   10.0 
UniRef50_A0QK95 Cluster: Putative uncharacterized protein; n=2; ...    31   10.0 

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 61.7 bits (143), Expect = 8e-09
 Identities = 36/64 (56%), Positives = 40/64 (62%)
 Frame = -1

Query: 254 ARRTNATTSFLTATILVYXXXXXXXXXXXTRLAXQLFLVKIFKVYSFRLRGLVRVPYRYF 75
           AR  + TTSFLTA  L+Y           TRLA Q  LVK FKV SF+L+GL RV Y YF
Sbjct: 34  ARSQDPTTSFLTAATLIYAIGAGITAAAGTRLALQWILVKGFKVDSFQLQGLERVLYCYF 93

Query: 74  SSLP 63
           SSLP
Sbjct: 94  SSLP 97


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 34.3 bits (75), Expect = 1.4
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -3

Query: 192 SWNYRGCWHQTCP 154
           SWNYR CWHQT P
Sbjct: 7   SWNYRSCWHQTGP 19


>UniRef50_Q81XZ5 Cluster: Prophage LambdaBa01,
           N-acetylmuramoyl-L-alanine amidase, family 2; n=9;
           root|Rep: Prophage LambdaBa01,
           N-acetylmuramoyl-L-alanine amidase, family 2 - Bacillus
           anthracis
          Length = 310

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 285 VSITADAVHRRAAHKCNYELFNRNNFSIRYWSWNYRGCWH 166
           V+ITAD +  R     NY++        +Y SW YR  W+
Sbjct: 254 VTITADVLRVRKGPGTNYDIVKNVYQGEQYQSWGYRDGWY 293


>UniRef50_A0QK95 Cluster: Putative uncharacterized protein; n=2;
           Mycobacterium avium|Rep: Putative uncharacterized
           protein - Mycobacterium avium (strain 104)
          Length = 380

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 246 HKCNYELFNRNNFSIRYWSWN 184
           H C YE+F++    +R+W+WN
Sbjct: 159 HNCYYEIFDQLGPQLRWWAWN 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,978,539
Number of Sequences: 1657284
Number of extensions: 8788849
Number of successful extensions: 18675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18674
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)