Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0015.Seq
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.039
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   2.5  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   3.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.039
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 219 RNNFSIRYWSWNYRGCWHQTC 157
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = -3

Query: 231  ELFNRNNFSIRYWSWNYRGCWHQTC 157
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/19 (36%), Positives = 7/19 (36%)
 Frame = -3

Query: 213  NFSIRYWSWNYRGCWHQTC 157
            NF      W Y  CW   C
Sbjct: 1511 NFDGLDLDWEYPKCWQVDC 1529



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 228  LFNRNNFSIRYW 193
            +F   NFSI YW
Sbjct: 1615 VFYNANFSINYW 1626



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/19 (36%), Positives = 7/19 (36%)
 Frame = -3

Query: 213  NFSIRYWSWNYRGCWHQTC 157
            NF      W Y  CW   C
Sbjct: 2434 NFDGLDLDWEYPKCWQVDC 2452


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -3

Query: 282 SITADAVHRRAAHKCNYELFNRNNFSIRYWSWNY 181
           ++ ADA  R    K   E F   NF      W Y
Sbjct: 111 AVAADATKRATMAKSALEFFETYNFDGLDVDWEY 144


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = -3

Query: 210 FSIRYWSWNYRGCWHQ 163
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,175
Number of Sequences: 336
Number of extensions: 2123
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)