Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0015.Seq
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.8  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 473 PIFYYSMHEIFKQHF*PA 420
           PI  Y MH+I K+   PA
Sbjct: 260 PIDAYEMHQISKKKLSPA 277


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 237 NYELFNRNNFSIRYWSWNY 181
           NY   N NN+   Y++ NY
Sbjct: 95  NYNNNNYNNYKKLYYNINY 113


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 237 NYELFNRNNFSIRYWSWNY 181
           NY   N NN+   Y++ NY
Sbjct: 105 NYNNNNYNNYKKLYYNINY 123


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 103 PRNRNEYTLNILTRNNW 153
           PRN +EY  N L    W
Sbjct: 368 PRNIDEYNNNDLDTKKW 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,100
Number of Sequences: 438
Number of extensions: 2992
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)