Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0015.Seq
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59940.1 68416.m06689 kelch repeat-containing F-box family pr...    29   1.2  
At2g44130.1 68415.m05489 kelch repeat-containing F-box family pr...    27   5.0  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   6.6  

>At3g59940.1 68416.m06689 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 418

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 101 LVRVPYRYFSSLPAPCREW 45
           LVRVP+++ SS+ + CR W
Sbjct: 28  LVRVPFQFHSSIKSVCRSW 46


>At2g44130.1 68415.m05489 kelch repeat-containing F-box family
           protein very low similarity to SP|Q9ER30 Kelch-related
           protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 409

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 110 LRGLVRVPYRYFSSLPAPCREW 45
           L  LVRVP+++ S++ + CR W
Sbjct: 29  LECLVRVPFQFQSAMRSVCRSW 50


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 425 PALSTLICSK*NCRPTSTLTEEH 357
           P+ S L+C K +C   ST TE H
Sbjct: 391 PSASQLLCQKCHCAVKSTSTENH 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,864,769
Number of Sequences: 28952
Number of extensions: 185421
Number of successful extensions: 388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)