Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0013.Seq
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.68 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.8  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   6.3  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   6.3  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.3  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 668 HHVDHQALPXDAQGPYQARFYEDAHEIAYSAQF 766
           HHVDHQ +P       + R    A  +A +A F
Sbjct: 159 HHVDHQPVPYLTPADDRGRVAAAAAMVAETASF 191


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 647 YPQHHVEHHVDHQALPXDAQG 709
           +PQHH  HH     +    QG
Sbjct: 175 HPQHHQPHHQQQHMMYGGQQG 195


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 702 HKGPTKRDSTKTLTK 746
           H GPT  D+TK L K
Sbjct: 316 HGGPTPSDATKALEK 330


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 647 YPQHHVEHHVDHQALPXDAQG 709
           +PQHH  HH     +    QG
Sbjct: 177 HPQHHQPHHQQQHMMYGGQQG 197


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 331 DLPSELDMPLDGEDEAEV 384
           D+   ++ P+DGED+ +V
Sbjct: 336 DVKRIINQPMDGEDQCDV 353


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 92  QWMSSVANDDEIKITEDLS 148
           QWM  V +  ++K+T ++S
Sbjct: 66  QWMQKVVSFHKLKLTNNIS 84


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 92  QWMSSVANDDEIKITEDLS 148
           QWM  V +  ++K+T ++S
Sbjct: 66  QWMQKVVSFHKLKLTNNIS 84


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 568 ETKSKSLPGLQSDEGLAPKGR 506
           E   K LP  ++DE + P G+
Sbjct: 93  EKPRKVLPNFKTDEPICPDGK 113


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 568 ETKSKSLPGLQSDEGLAPKGR 506
           E   K LP  ++DE + P G+
Sbjct: 100 EKPRKVLPNFKTDEPICPDGK 120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,993
Number of Sequences: 336
Number of extensions: 3187
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)