Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0013.Seq
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    29   0.74 
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   2.3  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   2.3  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   4.0  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   5.2  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   5.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.2  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   9.2  

>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 614 KPKVVNYEEFHYPQHHVEHHVDHQALPXDAQGP--YQARFYEDAHEIAYSAQ 763
           KP  V+Y      + HV+     QAL  D Q P  YQAR +   +E+  S+Q
Sbjct: 52  KPVDVSYAGLARHESHVDTDYHGQALNTDNQDPKNYQARSFVKENELYESSQ 103


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 116 DDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYE 220
           ++ I I++D+S+ +T  V+D+  A+  + +D   E
Sbjct: 884 EENIDISQDISMTETNAVDDEVQAENSILQDEVEE 918


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +1

Query: 226 RQSGQVSPESTLRVKVPEE--ITKSAASEYVPRSLLTDLPSELDMPLDGEDE 375
           ++S   SP+ ++  KV ++  ++++   E  P ++ T + +ELD+P+ G+DE
Sbjct: 114 KRSLSESPQESMLEKVSKKPKVSEAHNEEISPENVET-IENELDLPVKGKDE 164


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 524 PFIALKTWKALTLGLISLVLSG--AMVIFKFTKPKVVNYEEFHYPQH 658
           P + L  W+ + L +  L+     A+++FK   P ++N+ E  +  H
Sbjct: 320 PHMDLSVWRLVVLAICILIARRIPAVLLFKSFVPDIINWREALFAGH 366


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 481 GLKFKASVLVPWALALHRSEDLEGSYSWSH 570
           G+K KA + VP    +  +E LEG Y   H
Sbjct: 463 GIKLKALLRVPLPSEMKEAEPLEGRYPSDH 492


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 265  VKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEVVE 390
            V V   IT +   EY+ +   T L  ++ +  DG+D  E+ E
Sbjct: 1042 VTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKDREEIGE 1083


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 86   TLQWMSSVANDDEIKITEDLSIVKTGTVEDDESA 187
            TL   SS AND+  ++T  +++  T T + D+SA
Sbjct: 1232 TLDGNSSSANDNTQELTNVVNVALTSTGDLDDSA 1265


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 68  ECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDKFL 247
           +CV  R L     + +   + I + + I+K G  + DES +   A   AY+  +  D  L
Sbjct: 206 KCVYARVLP---KIGDFRYLSIKKRVRILKWGLNDRDESVEKAAADMLAYQWIENADNNL 262

Query: 248 QSLL 259
             LL
Sbjct: 263 LELL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,115
Number of Sequences: 5004
Number of extensions: 54819
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)