Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0013.Seq
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    30   1.8  
09_02_0532 + 10320734-10320765,10321260-10321301,10321399-103214...    29   3.1  
12_02_0660 + 21636604-21636822                                         29   4.1  
06_02_0036 - 10844876-10846173,10846490-10847012                       29   5.4  
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792...    28   7.2  
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791...    28   7.2  
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    28   9.5  

>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
 Frame = +2

Query: 584 SGAMVIFKFTKPKVVNYEEFHYPQHHVEHHVD----HQ---ALPXDAQGPYQARFYEDAH 742
           S   +  +  KP    +  +H+  HH  HH D    HQ    LP + +     RF  D +
Sbjct: 6   SAVALALRAAKPSSCAHSTYHHHHHH-HHHGDGGDCHQQELLLPLNPRAAAAPRFMLDGY 64

Query: 743 EIAYSAQFL 769
            + +SA FL
Sbjct: 65  LLRHSAHFL 73


>09_02_0532 +
           10320734-10320765,10321260-10321301,10321399-10321435,
           10322464-10322733
          Length = 126

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 244 SPESTLRVKVPEEITKSAASEYVPRSLLTDLPSELDMPLDGEDEAEV 384
           +P++ +RV        +A    +PR L   +P+E D+  +GEDE EV
Sbjct: 5   TPKNKVRVSQTVGARVTAPRRRLPRYLYYRIPTEGDLLSNGEDEHEV 51


>12_02_0660 + 21636604-21636822
          Length = 72

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 104 SVANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAYEMFDKVDK 241
           + +  DEIK T D     T +  DDE+ DP+ ++ P  E+    DK
Sbjct: 19  TTSRTDEIKATTDKVNDITTSHGDDETRDPQTSRGPEDEVVGPGDK 64


>06_02_0036 - 10844876-10846173,10846490-10847012
          Length = 606

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 183 LPTLDWPRIRPTKCSTKWTSF 245
           + T D P++ PTKCST  +SF
Sbjct: 74  IATKDLPKVTPTKCSTLCSSF 94


>11_02_0063 +
           7916048-7917135,7917225-7918690,7920177-7920238,
           7921808-7922407
          Length = 1071

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 676 YVVLHMVLRIVEFFVVHDLGLREFEDDHGTR*NKGN 569
           Y  + M+L +V F ++  L  R  ++ HG+  NKGN
Sbjct: 250 YGRITMILGVVRFLLLQALAFRGHDESHGSS-NKGN 284


>11_02_0062 -
           7909343-7909413,7909509-7910974,7911064-7912088,
           7912300-7912809,7913418-7913441,7913617-7913673
          Length = 1050

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 676 YVVLHMVLRIVEFFVVHDLGLREFEDDHGTR*NKGN 569
           Y  + M+L +V F ++  L  R  ++ HG+  NKGN
Sbjct: 426 YGRITMILGVVRFLLLQALAFRGHDESHGSS-NKGN 460


>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 445 GFIKKVILPFLLGLKFKASVLVPWALALHRS 537
           G++   +LPF+ GL  K S  +PW++ L  S
Sbjct: 749 GWLLLCLLPFVRGLVGKGSYGIPWSVKLKAS 779


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,991,585
Number of Sequences: 37544
Number of extensions: 373181
Number of successful extensions: 1199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)