Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0013.Seq
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)                  37   0.016
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.45 
SB_41914| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)                    29   3.2  
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  29   5.5  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   7.3  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  28   7.3  

>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
          Length = 822

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = +2

Query: 17  SKLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPR 196
           SKLVK  Y   L    +  +KP   Q +SS+  DDEI  TE+  I++T T    +   PR
Sbjct: 15  SKLVKQRYRTELRSRILASIKPEISQALSSLL-DDEIHGTEEEKIMRTATRSFTKGLKPR 73

Query: 197 LAKDP 211
            +  P
Sbjct: 74  SSTHP 78


>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1429

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 20  KLVKNIYNECLSQYSVECVKPRTLQWMSSVANDDEIKITEDLSIVKTGTVEDDESADPRL 199
           KLVK  Y   L   ++  +KP   Q +S +   DEI  TE+  I++T T    +   PR 
Sbjct: 460 KLVKRRYGTELRSRTLALIKPEISQALSLLL--DEIHGTEEAKIMRTATQSFTKGPKPRS 517

Query: 200 AKDP 211
           +  P
Sbjct: 518 STHP 521


>SB_41914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 111 PTTTKLRSLKIFLS*RPEQLRMMNLPTLDWPRIRPTK 221
           PT  KL+++    + RP+ L + + P  DWP +R T+
Sbjct: 5   PTGRKLQAVLHNNAIRPQSLTLCHQPNCDWPTVRLTQ 41


>SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)
          Length = 348

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 140 DLSIVKTGTVEDDESADPRLAKDPAYEMFDK--VDKFL 247
           D+SIV  G V D   +DPR+ KDP  ++F    VD FL
Sbjct: 34  DVSIVLNGAVAD---SDPRVLKDPKRKVFKTGGVDAFL 68


>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 95  WMSSVANDDEIKITEDLSIVKTGTVEDD 178
           W++ V N+D +K+TE+ S+V   T + D
Sbjct: 3   WINVVDNEDLVKLTEESSVVILATYDGD 30


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 346 AQKASQSRETLARTLKQHFXXXXXXXXXXXXXXEKLVHFVEHFVGRILGQS 194
           +Q  S S+E  +R++ + F              E L  FV +F GR+L Q+
Sbjct: 469 SQAVSSSKEMTSRSMSRDFSHEEAKVNTQMANAENLTTFVRNFAGRVLSQT 519


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 557 TLGLISLVLSGAMVIFKFTKPKVVNYEEFH-YPQHHVEHHVDH 682
           T+ +I + ++   +I     P +V Y   H + QHH  HH  H
Sbjct: 183 TITIIIITITSTTII-TMPSPSIVIYRRHHQHHQHHHHHHHQH 224


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 107 VANDDEIKITEDLSIVKTGTVEDDESADPRLAKDPAY-EMFDKVDKFL 247
           + +DD+I   +D++     T EDD +++  +  +PA  E+ D+ ++ L
Sbjct: 114 ITSDDDITSDDDITSDDDITSEDDITSEDNITTEPAIKEVIDRANELL 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,696,728
Number of Sequences: 59808
Number of extensions: 426329
Number of successful extensions: 1483
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)