Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0013.Seq
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    27   0.15 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 515 QGTRTEALNLRPSRKGRITFLMK 447
           Q  R  ALN++P+ KGRIT   K
Sbjct: 445 QAVRMSALNVQPTSKGRITLNSK 467


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 641 FHYPQHHVEHHVDHQAL 691
           +H   HHV HH +H A+
Sbjct: 274 YHLDNHHV-HHANHHAI 289


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 631 VHDLGLREFEDDHGTR*NKGNETKSKS 551
           ++D+GL   + D G+  N G+E+  ++
Sbjct: 186 INDIGLNRRDSDDGSDGNDGDESSCRA 212


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 167 VEDDESADPRLAKDPAYEMFD--KVDKFL 247
           +++DES  P+L   P +EM D  K+D  +
Sbjct: 82  LKNDESESPKLNPYPNWEMNDINKIDSII 110


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 610 EFED-DHGTR*NKGNETKSKSLPGLQSDEGLAPKGREQ 500
           ++ED D+G + N+ +  K        +DE  A K +EQ
Sbjct: 115 DYEDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQ 152


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 108 TDDIHCRVLGFTHSTEYWLR 49
           T  +HC V G T  T  WL+
Sbjct: 824 TATLHCEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 108 TDDIHCRVLGFTHSTEYWLR 49
           T  +HC V G T  T  WL+
Sbjct: 820 TATLHCEVHGDTPVTVTWLK 839


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 210 RPTKCSTKWTSFSR 251
           +PTK  ++W S+SR
Sbjct: 537 KPTKEDSEWPSYSR 550


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,161
Number of Sequences: 438
Number of extensions: 3468
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)