Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0011.Seq
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    30   0.47 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.4  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    27   2.5  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   3.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   7.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   7.7  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +1

Query: 247 PVPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIAL 411
           P+P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L
Sbjct: 170 PLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRL 229

Query: 412 PNSCA 426
            +S A
Sbjct: 230 YSSDA 234


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 653 PDRRFFAXGRWXPRSLKVDSCSKLGT 576
           PD +FF    W P  L + SC K G+
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFKYGS 245


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 73  VYFKYNANSLCLFRICFTYYACILDDFYL*RPISRFCI 186
           +Y K+N N   +F +  T  A     FY  R +SR  +
Sbjct: 151 IYLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLSV 188


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 240 GGPGTNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRN 383
           G  G N+PYS    +    +LQ++  ++    +  +  ++ PFA + N
Sbjct: 526 GYTGNNNPYSRPLQSQSTGILQQQQQQSAPRLEPTKTGSNNPFAQFSN 573


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 502 IFYQ*AEIGKIPYKSKE*TEIGLSVVPSLEQESTFKERGLQRPXAKNR 645
           +F+   +IG++P  + + T+IGLSV P  +Q   F E    R   K +
Sbjct: 489 VFWSLKKIGQLP--NPDPTDIGLSVNPVNQQLPDFAEYASVRKENKRK 534


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 435 PFXCATVGKGDRCGPLRYYASWRKGDV 355
           P  C  V  G R GP   Y +W+  DV
Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,936
Number of Sequences: 5004
Number of extensions: 60739
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)