Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0011.Seq
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         31   1.1  
12_01_0426 - 3356350-3356745,3357604-3357921                           30   2.0  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.0  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 463 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 329
           N+N YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>12_01_0426 - 3356350-3356745,3357604-3357921
          Length = 237

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 252 TNSPYSESYYNSLAVVLQRRDWEN 323
           TN   SESYY    V +Q RDW N
Sbjct: 198 TNVIPSESYYFKFGVYMQHRDWSN 221


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 277 ITIHWPSFYNVV-TGKTLALPNLIALQH 357
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,258,357
Number of Sequences: 37544
Number of extensions: 409156
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)