Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0011.Seq
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z82285-9|CAB05303.1| 513|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z82264-13|CAB05168.1| 513|Caenorhabditis elegans Hypothetical p... 29 4.1
AL132952-25|CAB63388.1| 513|Caenorhabditis elegans Hypothetical... 29 4.1
AL132846-9|CAB63368.1| 513|Caenorhabditis elegans Hypothetical ... 29 4.1
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 28 7.2
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 28 7.2
AC025726-6|AAK73923.2| 238|Caenorhabditis elegans Hypothetical ... 28 7.2
AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine re... 28 9.5
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +3
Query: 243 GPGTNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 377
G T +YN L + W N V +L L P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +3
Query: 243 GPGTNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAHPPFASW 377
G T +YN L + W N V +L L P F SW
Sbjct: 229 GSRTEWAVKSKWYNELNPKWNKEHWSNEEVEKLKYLRESPKFVSW 273
>Z82285-9|CAB05303.1| 513|Caenorhabditis elegans Hypothetical
protein T28F3.9 protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 252 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAH 359
TN +E YY + V+ +D +NPG LN +H
Sbjct: 470 TNIKMNEKYYEEMVTVIYHKDHKNPGY-HLNCTPSH 504
>Z82264-13|CAB05168.1| 513|Caenorhabditis elegans Hypothetical
protein T28F3.9 protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 252 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAH 359
TN +E YY + V+ +D +NPG LN +H
Sbjct: 470 TNIKMNEKYYEEMVTVIYHKDHKNPGY-HLNCTPSH 504
>AL132952-25|CAB63388.1| 513|Caenorhabditis elegans Hypothetical
protein Y51H4A.25a protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 252 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAH 359
TN +E YY + V+ +D +NPG LN +H
Sbjct: 470 TNIKLNEKYYEEMVTVIYHKDHKNPGY-HLNCTPSH 504
>AL132846-9|CAB63368.1| 513|Caenorhabditis elegans Hypothetical
protein Y51H4A.25a protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 252 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAH 359
TN +E YY + V+ +D +NPG LN +H
Sbjct: 470 TNIKLNEKYYEEMVTVIYHKDHKNPGY-HLNCTPSH 504
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 243 GPGTNSPYSESYYNSLAVVLQRRD---WENPGVTQLNRLAAHPPFASWRNSEEARTDRPS 413
GPGT S YSE S A + D +E P + + +P +SW + + A PS
Sbjct: 332 GPGTESGYSEPKALSTASQKTKPDDKPYEIPRSIEPSNSKPYPSDSSWSDHDNAPGSEPS 391
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 243 GPGTNSPYSESYYNSLAVVLQRRD---WENPGVTQLNRLAAHPPFASWRNSEEARTDRPS 413
GPGT S YSE S A + D +E P + + +P +SW + + A PS
Sbjct: 657 GPGTESGYSEPKALSTASQKTKPDDKPYEIPRSIEPSNSKPYPSDSSWSDHDNAPGSEPS 716
>AC025726-6|AAK73923.2| 238|Caenorhabditis elegans Hypothetical
protein Y71G12B.22 protein.
Length = 238
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 463 FVKIRVKFLLNQLIFYQ*AEIGKIPYKSKE*TEIGLSVVPSLEQESTFKERGLQRPXAKN 642
F + + F N+++ + E+G++ + E +G VVPSL + + + + AK
Sbjct: 138 FTALEMIFAKNEMMLKEEIEVGRLNSEWNEPLPVGQEVVPSLPRGNNAQIPRIMLNVAKE 197
Query: 643 RLSGRXATTGNHHPN 687
R+ A N N
Sbjct: 198 RIRSLVARPINSVKN 212
>AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine
receptor, class x protein9 protein.
Length = 309
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 52 KFSIYLYVYFKYNANSLCLFRICFTYYACILDDFY 156
K SIY+ +F ++ L LF +CF + I+ D Y
Sbjct: 38 KSSIYVIAFFNIISDLLQLFYLCFYFSLSIIIDQY 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,099,292
Number of Sequences: 27780
Number of extensions: 356075
Number of successful extensions: 620
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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