Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0004.Seq
         (543 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4M624 Cluster: ABC transporter related; n=3; Petrotoga...    33   5.6  
UniRef50_Q92AU9 Cluster: Lin1820 protein; n=12; Listeria|Rep: Li...    32   9.8  
UniRef50_Q5CNB8 Cluster: Rhoptry protein; n=2; Cryptosporidium|R...    32   9.8  

>UniRef50_A4M624 Cluster: ABC transporter related; n=3; Petrotoga
           mobilis SJ95|Rep: ABC transporter related - Petrotoga
           mobilis SJ95
          Length = 597

 Score = 32.7 bits (71), Expect = 5.6
 Identities = 25/64 (39%), Positives = 36/64 (56%)
 Frame = +1

Query: 157 LREKKKTIQYYVSQKLAVKLTL*SSLVFF*CXQEIKHMSDSIISNSCYAQITMVPFVLLF 336
           L+  KK ++Y   QK  + LT    LV       IK++ D II N  ++QI  +PFV+LF
Sbjct: 38  LKYSKKYLKY---QKTPLILTPLLLLVSILSPFLIKYLIDDIIGNHEFSQI--LPFVILF 92

Query: 337 NLVI 348
            +VI
Sbjct: 93  TIVI 96


>UniRef50_Q92AU9 Cluster: Lin1820 protein; n=12; Listeria|Rep:
           Lin1820 protein - Listeria innocua
          Length = 268

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +2

Query: 398 KTFTIALKLIFDMGIINSSKTSIHRNDRRRNVFQLIFIQA 517
           K + ++ K+I   G+ N++ TS+H  + R NVF LI  QA
Sbjct: 163 KLYQLSAKIIL-FGVDNNNNTSLHLAEERSNVFPLIENQA 201


>UniRef50_Q5CNB8 Cluster: Rhoptry protein; n=2; Cryptosporidium|Rep:
            Rhoptry protein - Cryptosporidium hominis
          Length = 1484

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 377  YFVKKTNKTFTIALKLIFDMGIINSSKTSIHRNDRRRNVFQLIF 508
            Y+  K N+  + +  L+F+   +NS+KT++  N  + N+FQ IF
Sbjct: 1015 YYQNKINEITSASKLLLFNYLKLNSTKTTLIHNYGKANLFQKIF 1058


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,608,081
Number of Sequences: 1657284
Number of extensions: 7470392
Number of successful extensions: 12604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12600
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)