Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0004.Seq
         (543 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   3.0  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   4.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   7.0  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = -2

Query: 203 SFCET*YWIVFFFSLSLTALGAVDQRPFH*RTVQV 99
           +F +  Y + FF +LS+  + ++  + FH   + +
Sbjct: 29  TFIQKFYAVAFFLALSIGVVVSIYSKSFHRNEIHI 63


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 372 PRLRSQFXDYQIK*QNKRNHRNLC 301
           PR+  +     +K +N+RN  N C
Sbjct: 177 PRITKKANSVSVKVENRRNSPNSC 200


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 372 PRLRSQFXDYQIK*QNKRNHRNLC 301
           PR+  +     +K +N+RN  N C
Sbjct: 125 PRITKKANSVSVKVENRRNSPNSC 148


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 372 PRLRSQFXDYQIK*QNKRNHRNLC 301
           PR+  +     +K +N+RN  N C
Sbjct: 308 PRITKKANSVSVKVENRRNSPNSC 331


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 93  KXIXNTHFLXSESERPDSLSETLNAFLTENC 1
           K +   + +  +S+RP + ++TL     E C
Sbjct: 21  KVVQELYDIFGDSDRPATFADTLEMKYLERC 51


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 359 LRSRGTYFVKKTNKTFTIALKLIFDMG 439
           L+  G  FV     T+TI L LIF  G
Sbjct: 232 LQILGILFVGVIYTTYTIFLLLIFGSG 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,450
Number of Sequences: 336
Number of extensions: 2185
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)