Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0004.Seq
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    29   3.2  
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042     27   9.7  

>06_03_0793 +
           24662506-24663512,24664470-24664787,24664996-24665323,
           24665465-24665887,24665960-24666252,24666332-24666605,
           24666856-24667358,24667464-24667785,24667875-24668220,
           24668339-24668997,24669524-24669625,24669656-24670052,
           24670155-24670270,24670360-24670386
          Length = 1704

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 436 HIKNKFKGDCERFVSFFYEISSPT 365
           HI+ KFK  C +  S FY +S  T
Sbjct: 777 HIQEKFKAKCRKSESVFYTVSDAT 800


>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
          Length = 1211

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 445  YYPHIKNKFKGDCERFVSFFY-EISSPTSESILXLPN 338
            ++PH+K+ F  DC   VS F  ++SS    ++  LP+
Sbjct: 1061 HWPHLKDIFIHDCRSSVSLFVGDLSSLKEFTLYHLPD 1097


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,939,369
Number of Sequences: 37544
Number of extensions: 178678
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)