Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0002.Seq
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 112 RAISPTQWKIFPSSL 156
           RA+ PT+WK+ PS++
Sbjct: 578 RALWPTEWKVRPSTV 592


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 106 NSRAISPTQWKIFPSSLNLPYVQ*PILSDKETKDFS 213
           N  +I+  +  I    LN  Y   P   DKETKD +
Sbjct: 434 NDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMN 469


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 130 EWVILLCYW*THGPN-SVVRNLYI 62
           +W+ +L  W  H PN   V N Y+
Sbjct: 653 KWLQVLALWLNHSPNYDQVTNWYM 676


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 376 SHDVVKRRPVNCNTTHYRANWVPGP 302
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,633
Number of Sequences: 438
Number of extensions: 5243
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)