Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0998
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.74 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.1  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 121 GVKPRAVTPSKRGRGRPATTRQYVGMAAARQAYLKAQXEEK 243
           G++P    PSK    +     Q VG     + Y K + EE+
Sbjct: 170 GIQPSPTLPSKEEVSKKIDDNQKVGYVVEGRNYRKYRVEER 210


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 395 RALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQRS 514
           R   E+    ++  EDLVG+     +  +   N KQ   S
Sbjct: 213 RKTTEIPPEPEDYVEDLVGHIEVNHSAPITTCNKKQHLES 252


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 599 TPAPKHQGWKRRSLRLTAHLLRA 667
           TP PKH G  R   R T+  + A
Sbjct: 214 TPRPKHDGRGRIVERFTSDRVHA 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,244
Number of Sequences: 336
Number of extensions: 2747
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)