Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0998
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    29   0.46 
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   1.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.4  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 121 GVKPRAVTPSKRGRGRPATTR 183
           G+ P  V P+KRGRGRP   R
Sbjct: 221 GLSPLVVLPAKRGRGRPPLHR 241


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 320 LGIGLRDRPXSRSPLVACGARASVSSFSSFC 228
           LG+ L     SRS L+ CG  +S+   S FC
Sbjct: 48  LGLNLCKLHDSRSALLKCGYASSIDPKSQFC 78


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 357 VAAKSSSPKDRTCVH*RSWQSLSRRPRRTLWATPQPKRLRDCERSTSSRS 506
           +++ S++   R+    RS +S++   R TL A P P  L D   STSS S
Sbjct: 1   MSSSSNTSSHRSYGLRRSQRSMNLN-RATLLAPPTPSSLYDANNSTSSTS 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,773
Number of Sequences: 5004
Number of extensions: 44704
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)