Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0998
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 32 0.48
07_03_1750 - 29207692-29208225 31 1.1
06_01_1143 - 9554338-9554983,9555004-9555746 30 1.5
06_01_0120 - 926226-926289,926821-926887,927122-927170,927257-92... 30 1.5
07_01_0127 - 955244-956278,956397-956651 30 1.9
05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441 29 2.5
03_02_0510 - 9009980-9011392 29 2.5
01_01_1203 - 9684054-9684255,9686421-9686572,9686645-9686740,968... 29 3.3
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 28 5.9
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 5.9
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 28 7.7
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 169 PATTRQYVGMAAARQAYLKAQXEEKELTEARAPHATRGERLXGLSLSPMPSVGSIKVQRW 348
PA + G+ + AY+ A K EA + AT GER L+L IK+ W
Sbjct: 145 PAWHLEKTGLFTVKSAYMLAWNLSKNAVEASSSTATSGERKLWLALWKTKVQAKIKIFAW 204
>07_03_1750 - 29207692-29208225
Length = 177
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 303 PKPDAERRLHQSAEVALMVAAKSSSPKDRTCVH*RSWQSLSRRPRRTLWATPQPKRLRDC 482
P P + R + +A+ AL VAA+ S R + R+ RR R L A P P R
Sbjct: 52 PSPASSREVRHAADRALAVAARGRSRWSRAILASRARACALRRVR--LGAPPPPPAARPA 109
Query: 483 ERS 491
RS
Sbjct: 110 PRS 112
>06_01_1143 - 9554338-9554983,9555004-9555746
Length = 462
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 169 PATTRQYVGMAAARQAYLKAQXEEKELTEARAPHATRGERLXGLSLSPMPSVGSIKVQRW 348
PA + G+ + AY A K + EA + AT GER L+L IK+ W
Sbjct: 89 PAWHLEKTGLFIVKSAYRLAWNLSKNVVEASSSTATSGERKLWLALWKTRVQAKIKIFAW 148
>06_01_0120 -
926226-926289,926821-926887,927122-927170,927257-927313,
927826-927897,928145-928236,928331-928403,928870-928944,
929207-929314,929372-929422,929834-929959,930324-930362,
930452-930535,931018-931109,931217-931300,931410-931524
Length = 415
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = -3
Query: 219 VRLPGSGHANVLPCSRRASPSTL*RRDCSGLHTCRILSLRAGAATQPVRAYIEHPF-PPS 43
+RLPG +L RRA PS+ S H R R G A + PF P+
Sbjct: 1 MRLPGDARLALLLARRRALPSSSPAASASPFHGSRAHGARWGDAFRAAAPAWRSPFSSPT 60
Query: 42 SCRRRMGRR 16
S R G R
Sbjct: 61 SARLFHGTR 69
>07_01_0127 - 955244-956278,956397-956651
Length = 429
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 222 EVRLPGSGHANVLP--CSRRASPSTL*RRDCSGLHTCRILS 106
+V PG+ + VLP C R+A STL DC+ C S
Sbjct: 113 KVDSPGAENPGVLPIICRRKAGKSTLIEHDCNDERVCNHFS 153
>05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441
Length = 757
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -1
Query: 272 ACGARASVSSFSSFCALRYACLAAAMPTYCLVVAGRPRPRFDGVTALG 129
A GA +V+ A R A +A+ T LVV+GR R R GVTA G
Sbjct: 623 AAGAYVAVAPVV-LAAARGALVASRRATTTLVVSGRCRCRRPGVTARG 669
>03_02_0510 - 9009980-9011392
Length = 470
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 329 PSKCRGGPDGRRQIQQPEGPYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNV 496
P + GP +RQ+ +P +R L V+ E + AA + +L A +V
Sbjct: 181 PIPAQPGPSAKRQVPEPGEKLIRELNSQRQKVRRLMESSLWSVAAHKVSKLMAKSV 236
>01_01_1203 -
9684054-9684255,9686421-9686572,9686645-9686740,
9686829-9687074,9688207-9688431
Length = 306
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 75 GRAE*QLRLGGSGSDRCEAQSSHAVKAW 158
GRA LR+GG GS RC ++ A W
Sbjct: 22 GRALLLLRVGGGGSGRCAGVAAAAAPGW 49
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +1
Query: 133 RAVTPSKRGRGRPATTRQYVGMAAARQAYLKAQXEEKELTEARAPHATRGERLXGLSLSP 312
R V+P G+P AAAR A ++A EA A A E +++P
Sbjct: 141 RVVSPGPESSGKPLRRSARQAKAAARVAEMEAAAAVAAAAEAEAAAAAMAEAEAEAAVTP 200
Query: 313 MPSVGS 330
P GS
Sbjct: 201 -PQSGS 205
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 344 GGPDGRRQIQQPEGPYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVK 499
G D R I+Q G RAL +++TV T ++G A AK L A+ K
Sbjct: 703 GELDSRENIRQAPGKKERALFAISITV--FTASVIGLGAIVSAKPLDALGYK 752
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 581 CPHSTATPAPKHQGWKRRSLRLTAH 655
C H T +P W++ S+R+ AH
Sbjct: 530 CTHRTPPHSPDEDSWRQSSMRIFAH 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,729,874
Number of Sequences: 37544
Number of extensions: 439267
Number of successful extensions: 1481
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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