Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0998
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  31   1.1  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)           29   2.6  
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  

>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 106 AQDPTGVKPRAVTPSKRGRGR 168
           +QDP GVKP  + PS R RGR
Sbjct: 617 SQDPQGVKPSGIDPSVRPRGR 637


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 127 KPRAVTPSKRGRGRPATTRQYVGMAAARQAYLKAQXEEKELTEARAPHATRGE 285
           K + + P  + +G+ A   +       RQA  K + +    T+ +A H T+G+
Sbjct: 205 KTKTIKPQPQDQGKQAARPRQASRKTKRQANRKTKRQANRKTKGQASHKTKGQ 257


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +1

Query: 127 KPRAVTPSKRGRGRPATTRQYVGMAAARQAYLKAQXEEKELTEARAPHATRGERLXGLSL 306
           K + +   K+GR RP+  R++VG      +  +A+ EE EL   RAP      R    +L
Sbjct: 88  KKKRMERKKKGR-RPSLFRRFVGAFRNNPSNSEAEDEESEL---RAPPDYLSHRRRSKTL 143

Query: 307 SPMPS 321
           S +P+
Sbjct: 144 SSLPT 148


>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
          Length = 262

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 425 KEATEDLVGYTAAEEAKRLRAVNVKQEQRSCNCVRXSMKLEGSWRGLRR 571
           KE+  + VG+  AE A  ++ +  K E+R    V    KL+G  +  RR
Sbjct: 67  KESLSETVGFDLAESADEIQILRKKTEERGKIAVEVDGKLDGLEQYSRR 115


>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 123 TCRILSLRAGAATQPVRAYIEHPFPP 46
           T  IL+   G  T  +++YIEHPF P
Sbjct: 215 TANILAYSCGRKTFHLKSYIEHPFNP 240


>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 447 WATPQPKRLRDCERSTSS 500
           W+  +PKRLR C+ ST S
Sbjct: 419 WSVMKPKRLRHCDESTGS 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,861,573
Number of Sequences: 59808
Number of extensions: 426662
Number of successful extensions: 1525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)