Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0998
         (668 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104911-1|AAI04912.1|  620|Homo sapiens GLIS family zinc finger...    31   2.8  
BC101799-1|AAI01800.1|  620|Homo sapiens GLIS family zinc finger...    31   2.8  
AL591720-1|CAH72026.1|  620|Homo sapiens GLIS family zinc finger...    31   2.8  
AK090634-1|BAC03494.1|  620|Homo sapiens protein ( Homo sapiens ...    31   2.8  
BC015612-1|AAH15612.1|  459|Homo sapiens ring finger protein 25 ...    30   8.6  
AK222525-1|BAD96245.1|  459|Homo sapiens ring finger protein 25 ...    30   8.6  
AK023968-1|BAB14743.1|  439|Homo sapiens protein ( Homo sapiens ...    30   8.6  
AB110790-1|BAD19019.1|  588|Homo sapiens synphilin-1c protein pr...    30   8.6  

>BC104911-1|AAI04912.1|  620|Homo sapiens GLIS family zinc finger 1
           protein.
          Length = 620

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 145 PSKRGRGRPATTRQYVG---MAAARQAYLKAQXEEKELTEARAPHATRGERLXGLS-LSP 312
           PSKR R  PA+T  + G   + A R+A    Q    E +E   PH         LS L P
Sbjct: 116 PSKRARPGPASTDSHEGSLQLEACRKASFLKQEPADEFSELFGPHQQGLPPPYPLSQLPP 175

Query: 313 MPSVGSI 333
            PS+G +
Sbjct: 176 GPSLGGL 182


>BC101799-1|AAI01800.1|  620|Homo sapiens GLIS family zinc finger 1
           protein.
          Length = 620

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 145 PSKRGRGRPATTRQYVG---MAAARQAYLKAQXEEKELTEARAPHATRGERLXGLS-LSP 312
           PSKR R  PA+T  + G   + A R+A    Q    E +E   PH         LS L P
Sbjct: 116 PSKRARPGPASTDSHEGSLQLEACRKASFLKQEPADEFSELFGPHQQGLPPPYPLSQLPP 175

Query: 313 MPSVGSI 333
            PS+G +
Sbjct: 176 GPSLGGL 182


>AL591720-1|CAH72026.1|  620|Homo sapiens GLIS family zinc finger 1
           protein.
          Length = 620

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 145 PSKRGRGRPATTRQYVG---MAAARQAYLKAQXEEKELTEARAPHATRGERLXGLS-LSP 312
           PSKR R  PA+T  + G   + A R+A    Q    E +E   PH         LS L P
Sbjct: 116 PSKRARPGPASTDSHEGSLQLEACRKASFLKQEPADEFSELFGPHQQGLPPPYPLSQLPP 175

Query: 313 MPSVGSI 333
            PS+G +
Sbjct: 176 GPSLGGL 182


>AK090634-1|BAC03494.1|  620|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33315 fis, clone BNGH42007037, moderately
           similar to ZINC FINGER PROTEIN GLI1 (GLI). ).
          Length = 620

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 145 PSKRGRGRPATTRQYVG---MAAARQAYLKAQXEEKELTEARAPHATRGERLXGLS-LSP 312
           PSKR R  PA+T  + G   + A R+A    Q    E +E   PH         LS L P
Sbjct: 116 PSKRARPGPASTDSHEGSLQLEACRKASFLKQEPADEFSELFGPHQQGLPPPYPLSQLPP 175

Query: 313 MPSVGSI 333
            PS+G +
Sbjct: 176 GPSLGGL 182


>BC015612-1|AAH15612.1|  459|Homo sapiens ring finger protein 25
           protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 447 WATPQPKRLRDCERSTSSRSRDPATA 524
           W  P P+R RDC R   S+ R P ++
Sbjct: 406 WQGPPPRRTRDCVRWERSKGRTPGSS 431


>AK222525-1|BAD96245.1|  459|Homo sapiens ring finger protein 25
           variant protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 447 WATPQPKRLRDCERSTSSRSRDPATA 524
           W  P P+R RDC R   S+ R P ++
Sbjct: 406 WQGPPPRRTRDCVRWERSKGRTPGSS 431


>AK023968-1|BAB14743.1|  439|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13906 fis, clone Y79AA1000013, moderately
           similar to Mus musculus RING finger protein AO7 mRNA. ).
          Length = 439

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 447 WATPQPKRLRDCERSTSSRSRDPATA 524
           W  P P+R RDC R   S+ R P ++
Sbjct: 406 WQGPPPRRTRDCVRWERSKGRTPGSS 431


>AB110790-1|BAD19019.1|  588|Homo sapiens synphilin-1c protein
           protein.
          Length = 588

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 485 AVNVKQEQRSCNCVRXSMKLEGSWRGLRRC*RCPHSTATP 604
           AV+V  +     C++  +K++G+W G   C    H ++ P
Sbjct: 507 AVHVASQHGYLGCIQTRLKIQGTWNGSETCLFTHHFSSYP 546


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,884,421
Number of Sequences: 237096
Number of extensions: 2134521
Number of successful extensions: 6460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6460
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)