Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0998
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z73973-5|CAA98267.2|  882|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical p...    28   6.9  
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    28   6.9  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 387 GPSGCWIWRRPSGPPLHFDGAYARHR 310
           G +   +WR+ S PPLHF+    R+R
Sbjct: 61  GSASPTVWRKTSHPPLHFNNNETRNR 86


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 387 GPSGCWIWRRPSGPPLHFDGAYARHR 310
           G +   +WR+ S PPLHF+    R+R
Sbjct: 64  GSASPTVWRKTSHPPLHFNNNETRNR 89


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 387 GPSGCWIWRRPSGPPLHFDGAYARHR 310
           G +   +WR+ S PPLHF+    R+R
Sbjct: 64  GSASPTVWRKTSHPPLHFNNNETRNR 89


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 KPRAVTPSKRGRGRPATTRQYVGMAAARQAYLKAQXEEKE 246
           K +   PS RGRGRP ++ +    AA +++   A  E  E
Sbjct: 330 KKKKGAPSTRGRGRPPSSNRPTRAAATKRSAKDASDESNE 369


>Z73973-5|CAA98267.2|  882|Caenorhabditis elegans Hypothetical
           protein F25D1.4 protein.
          Length = 882

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 485 AVNVKQEQRSCNCVRXSMKLEGSWRGLRRC*RCP--HSTATPAPKHQGWKRRSL 640
           +V+VKQ ++ C C+     +   +RG+      P  +ST  P  K++ WK+R++
Sbjct: 305 SVSVKQIEKECGCIPIRNPI---YRGVFDNKNDPLNNSTEIPKKKYKKWKKRNI 355


>Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical
           protein F35C5.9 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 420 VTANSFSARTYGPSGCWIWRRPSGPPL 340
           +T N+F       +G W W +PSG PL
Sbjct: 313 ITINAFYNGLTNYNGTWWWDQPSGQPL 339


>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 129 LHTCRILSLRAGAATQPVRAYIEHPFPPSSCRRRMG 22
           LHT  +    +   T P++  I H FP +S R+RMG
Sbjct: 533 LHTMTLDVQPSNGTTVPIQFQILHVFPFTSERKRMG 568


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +3

Query: 357 VAAKSSSPKDRTCVH*RSWQSLSRRPRRTLWATPQPKRLRDCERSTSSRSRDP 515
           + A S+SP  R      S +  SR P R    +P P R R   RS   RSR P
Sbjct: 84  IRAPSASPPRRR--RDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSP 134


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 426 RRPRRTLWATPQPKRLRDCERSTSS 500
           RRPRR L ATP+P      E S  S
Sbjct: 204 RRPRRVLPATPEPSTPESVETSEKS 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,180
Number of Sequences: 27780
Number of extensions: 288688
Number of successful extensions: 813
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)