Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0998
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13560.1 68418.m01566 expressed protein weak similarity to SP...    33   0.23 
At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    30   1.2  
At5g02970.1 68418.m00240 hydrolase, alpha/beta fold family prote...    29   3.7  
At4g31880.1 68417.m04531 expressed protein                             29   3.7  
At4g02235.1 68417.m00303 MADS-box family protein contains Pfam p...    27   8.5  
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id...    27   8.5  

>At5g13560.1 68418.m01566 expressed protein weak similarity to
           SP|O42184 Restin (Cytoplasmic linker protein-170)
           (CLIP-170) {Gallus gallus}
          Length = 679

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 475 ETASGQRQAGAEILQLRKXLDEVRRELARVTQVLA 579
           ET   +++ GAEI QL K  DE+  +L RV   LA
Sbjct: 343 ETGEKEKELGAEIAQLEKQRDELEADLKRVNLSLA 377


>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
            similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 103  EAQDPTGVKPRAVTPSKRGRGRPATTRQYVGMAAAR 210
            E++ P G K R +  +KRGRGRP   +Q + +  AR
Sbjct: 1452 ESKVPEGSKKRKLE-TKRGRGRPKKVKQEISIRKAR 1486


>At5g02970.1 68418.m00240 hydrolase, alpha/beta fold family protein
           contains Interpro entry IPR000379
          Length = 514

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 332 SKCRGGPDGRRQIQQPEGPYVRALKELAVTVKEATEDLV 448
           +K R  P G  ++Q P+G Y+ A +EL V+ + A   LV
Sbjct: 151 TKLRLHPTGATRVQLPDGRYI-AYQELGVSAERARYSLV 188


>At4g31880.1 68417.m04531 expressed protein
          Length = 873

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 365 QIQQPEGPYVR-ALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQRSC 517
           +I  P+ PY    +KE+   +  + EDLV  ++   AKR+  +    + RSC
Sbjct: 88  RITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSSRSYAKRISILETVAKVRSC 139


>At4g02235.1 68417.m00303 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); low similarity to
           APETALA3 homolog PcAP3 [Papaver californicum] GI:3170498
          Length = 196

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +2

Query: 347 GPDGRRQIQQPEGPYVRALKELAVTVKEATEDLVGYTAAEEAKRLRAVNVKQEQRSCNCV 526
           GPDG  +    E      +K++A   KEAT+     T +   +RLR V   Q+Q++ N V
Sbjct: 46  GPDGELRTWPKER---NTVKDMASRYKEATKRKKKRTLSTLQERLRIVE-SQKQQNKNLV 101

Query: 527 RXSM 538
             S+
Sbjct: 102 HQSL 105


>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
           identical to GI:2347100
          Length = 365

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 448 HKVLRGLLDSDCQLLQCTHV--RSFGLLDLAATIRATSAL*WSLRSASGLGT 299
           HK+ +G+L ++ + L+C  V  R    LDL+  I   S++   L++ S   T
Sbjct: 168 HKIFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTET 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,480
Number of Sequences: 28952
Number of extensions: 279924
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)