Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0997
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    31   0.11 
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    28   1.1  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   3.2  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    27   3.2  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.4  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   9.8  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   9.8  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 21/87 (24%), Positives = 43/87 (49%)
 Frame = +1

Query: 361 LVSFFQAYIYGCYYVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGYFI*VSILHWAKS 540
           ++     Y+    ++K + KY ++     ++  T+++ ++ L A SG  I  ++ +W K 
Sbjct: 408 VIRMVSKYVGEDTFIKGIQKYISKHRYGNTV--TEDL-WAALSAESGQDISSTMHNWTKK 464

Query: 541 NFNTLKKICENYDGQCLLEQSLFLQMG 621
               +  + E  DG+ L+EQ  FL  G
Sbjct: 465 TGYPVLSVSETNDGELLIEQHRFLSTG 491


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 298 SRIRDEEYQFV*NPPHNSNNSLQSYIPQNRYN 203
           SR  D    F+ N P +S  + Q Y P NR+N
Sbjct: 233 SRWNDPAASFLTNKPVSSKATYQGYAPPNRFN 264


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 167 MDVTCDIFSKRLIISVLWNIGLQAVIAVMWWVS 265
           +D T +I  K L+    WN   QA +A  WWV+
Sbjct: 31  IDNTVNIMMKDLMN--YWNASSQAFVASYWWVT 61


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 214 FVEYRTASCYCCYVVGFIQIDILHPVSWISSSI-NDVFGW 330
           FV+Y  ASC   Y    + + ILH   WI  S+ N + GW
Sbjct: 220 FVKY-LASCLEYYYPQSLGVCILHKSPWIFRSVWNIIKGW 258


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 458 ALKILYLAFCTP*VAISYESLFFIGQKVIL 547
           A +++++ FCT  +AI + S+FFI  + ++
Sbjct: 549 AFRVIWI-FCTVVMAIGFASIFFIKSRPLI 577


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 543 ITFCPMKNRDSYEIATQGVQNAKYNILSAK 454
           ITF P  N D   +  +  +N KYN  S K
Sbjct: 501 ITFTPFVNLDDELLLIEKEKNEKYNFTSRK 530


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 346 IVLLGLVSFFQAYIYGCYYVKPLPKYFTRF 435
           ++L+GL S +  ++Y   + KP+  + +R+
Sbjct: 454 VLLMGLFSMYVGFVYNDLFSKPMSIFSSRW 483


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 276 YSSSRILDIVIYK*CIWLENEHKYRIAWTRVFF 374
           Y+S+R+L   + K  + LE  ++YRIA+   FF
Sbjct: 393 YASTRVLINGLVKGGVPLEKIYRYRIAFRGKFF 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,644
Number of Sequences: 5004
Number of extensions: 65337
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)