Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0997
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0384 - 17430316-17430470,17430647-17430813,17431234-174315...    29   3.3  
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800...    28   7.7  
11_04_0112 - 13585293-13585988,13586095-13586619                       28   7.7  
09_04_0073 - 14333096-14333290,14333377-14333638,14333811-143339...    28   7.7  
07_01_0972 - 8176013-8176960                                           28   7.7  

>10_08_0384 -
           17430316-17430470,17430647-17430813,17431234-17431531,
           17431797-17431880,17432321-17432437,17433883-17433976,
           17434893-17435035,17435134-17435297,17435753-17435918,
           17436394-17436560,17436894-17437020,17439805-17439901
          Length = 592

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/94 (23%), Positives = 40/94 (42%)
 Frame = +1

Query: 382 YIYGCYYVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKK 561
           Y++   + K LP+      + LS+    N   + L+ +SG F+  S   W  SNF  L K
Sbjct: 205 YLFPQSWDKLLPEPGMMIELTLSILNQNN---AQLHKVSGRFVFASKNGWGWSNFIALNK 261

Query: 562 ICENYDGQCLLEQSLFLQMGGMWMGLYYFLNAPY 663
           + +     C+++  + +        + Y L   Y
Sbjct: 262 LKDLVGSSCIVKADITIIGSSSESQIVYMLRLIY 295


>11_06_0234 +
           21574380-21575197,21576131-21576190,21578320-21580053,
           21581859-21582006
          Length = 919

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 267 YETHHITAITACSPIFHKTDIISLFEKISHVTSI 166
           Y+ + I +I A  PIF    I+ L+EK++++  +
Sbjct: 135 YDRYRIDSIDAKPPIFIDPRILGLYEKVTNLVGV 168


>11_04_0112 - 13585293-13585988,13586095-13586619
          Length = 406

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 327 LENEHKYRIAWTRVFFSGLY-LRLLLRKAT 413
           ++  +  RIA TRV + GLY L ++L KAT
Sbjct: 314 MDKNNSIRIAPTRVMYHGLYILMMMLTKAT 343


>09_04_0073 -
           14333096-14333290,14333377-14333638,14333811-14333965,
           14334039-14334147,14335094-14335131
          Length = 252

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +1

Query: 346 IVLLGLVSFFQAYIYGCYYVKPLPKYF 426
           I LLGL  FFQA I G    KP P  F
Sbjct: 142 ISLLGLTDFFQAVIVGGECEKPKPAPF 168


>07_01_0972 - 8176013-8176960
          Length = 315

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/84 (25%), Positives = 39/84 (46%)
 Frame = +1

Query: 397 YYVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKKICENY 576
           YY K L    +  ++ +S    ++    +L  LSG++  V  + WA   + T+   C +Y
Sbjct: 21  YYGKRLATASSDSTVKISSIGGKSAPSQLLATLSGHYGPVWRVAWAHPKYGTILASC-SY 79

Query: 577 DGQCLLEQSLFLQMGGMWMGLYYF 648
           DG+ ++ +      GG W   + F
Sbjct: 80  DGRVIIWKE---GAGGHWSQAHVF 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,049,229
Number of Sequences: 37544
Number of extensions: 336395
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)