Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0997
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51084| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_47744| Best HMM Match : RrnaAD (HMM E-Value=5.2e-06)                28   5.9  
SB_53805| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_51084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 532 AKSNFNTLKKICENYDGQCLLEQSLFL 612
           +K N   L+ + + YD +CL +Q+LFL
Sbjct: 217 SKRNVRKLQDVNQLYDSECLSQQTLFL 243


>SB_47744| Best HMM Match : RrnaAD (HMM E-Value=5.2e-06)
          Length = 401

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 406 KPLPKYFTRFSMFLSLFCTQNII 474
           +P  KY+ R S+  SLFC  N+I
Sbjct: 229 QPGTKYYNRLSIMASLFCDVNVI 251


>SB_53805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 185 YHTLHPFCRLLNFITKFKSME*AGKY 108
           Y+ L P CR LNF+  FK +  +G Y
Sbjct: 103 YYFLDPECRKLNFMIYFKGVFTSGSY 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,584,317
Number of Sequences: 59808
Number of extensions: 434824
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)