Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0997
(667 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL354613-1|CAB89726.1| 673|Homo sapiens hypothetical protein pr... 45 3e-04
DQ141696-1|AAZ73087.1| 674|Homo sapiens NDC1 protein. 43 9e-04
BC003082-1|AAH03082.1| 674|Homo sapiens transmembrane protein 4... 43 9e-04
AL354612-1|CAB89725.1| 542|Homo sapiens hypothetical protein pr... 42 0.001
AL049745-2|CAI22180.1| 674|Homo sapiens transmembrane protein 4... 42 0.001
AK001269-1|BAA91592.1| 674|Homo sapiens protein ( Homo sapiens ... 42 0.001
BC109310-1|AAI09311.1| 873|Homo sapiens N-deacetylase/N-sulfotr... 31 4.9
BC109309-1|AAI09310.1| 873|Homo sapiens N-deacetylase/N-sulfotr... 31 4.9
AY358852-1|AAQ89211.1| 385|Homo sapiens HSS3 protein. 31 4.9
AF074924-1|AAD15978.1| 873|Homo sapiens heparan sulfate N-deace... 31 4.9
AC108201-1|AAY41001.1| 356|Homo sapiens unknown protein. 31 4.9
>AL354613-1|CAB89726.1| 673|Homo sapiens hypothetical protein
protein.
Length = 673
Score = 44.8 bits (101), Expect = 3e-04
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Frame = +1
Query: 238 CYCCYVVGFIQIDILHPVSWISSSINDVFGWKMSINIVLLGLVSFFQAYIYGCYYVKP-L 414
C +++ F +ID+ HP+ W+S S +D++ + +LL +V + +YV P +
Sbjct: 39 CTTVFII-FSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYVVPSI 97
Query: 415 PKYFTRFSMFLSLFCTQNIIFSILYALSGYFI--*VSILHWAKSNFNTLKKICENYDGQ- 585
P +R ++ + Q ++ S ++A G + +++ + +F + N G
Sbjct: 98 P--CSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSP 155
Query: 586 ----CLLEQSLFLQMGGMWMGLYYFL 651
CL E LF + G +MG Y L
Sbjct: 156 AAQTCLNEYHLFFLLTGAFMGYSYSL 181
>DQ141696-1|AAZ73087.1| 674|Homo sapiens NDC1 protein.
Length = 674
Score = 43.2 bits (97), Expect = 9e-04
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Frame = +1
Query: 238 CYCCYVVGFIQIDILHPVSWISSSINDVFGWKMSINIVLLGLVSFFQAYIYGCYYVKPLP 417
C +++ F +ID+ HP+ W+S S +D++ + +LL +V + I+ + +P
Sbjct: 39 CTTVFII-FSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIIS-IFNVEFYAVVP 96
Query: 418 KY-FTRFSMFLSLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKKIC---ENYDG- 582
+R ++ + Q ++ S ++A G + + ++ L C ++D
Sbjct: 97 SIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFDSP 156
Query: 583 ---QCLLEQSLFLQMGGMWMGLYYFL 651
CL E LF + G +MG Y L
Sbjct: 157 AAQTCLNEYHLFFLLTGAFMGYSYSL 182
>BC003082-1|AAH03082.1| 674|Homo sapiens transmembrane protein 48
protein.
Length = 674
Score = 43.2 bits (97), Expect = 9e-04
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Frame = +1
Query: 238 CYCCYVVGFIQIDILHPVSWISSSINDVFGWKMSINIVLLGLVSFFQAYIYGCYYVKPLP 417
C +++ F +ID+ HP+ W+S S +D++ + +LL +V + I+ + +P
Sbjct: 39 CTTVFII-FSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIIS-IFNVEFYAVVP 96
Query: 418 KY-FTRFSMFLSLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKKIC---ENYDG- 582
+R ++ + Q ++ S ++A G + + ++ L C ++D
Sbjct: 97 SIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFDSP 156
Query: 583 ---QCLLEQSLFLQMGGMWMGLYYFL 651
CL E LF + G +MG Y L
Sbjct: 157 AAQTCLNEYHLFFLLTGAFMGYSYSL 182
>AL354612-1|CAB89725.1| 542|Homo sapiens hypothetical protein
protein.
Length = 542
Score = 42.3 bits (95), Expect = 0.001
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Frame = +1
Query: 238 CYCCYVVGFIQIDILHPVSWISSSINDVFGWKMSINIVLLGLVSFFQAYIYGCYYVKPLP 417
C +++ F +ID+ HP+ W+S S +D++ + +LL +V + I+ + +P
Sbjct: 39 CTTVFII-FSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIIS-IFNVEFYAVVP 96
Query: 418 KY-FTRFSMFLSLFCTQNIIFSILYALSGYFI--*VSILHWAKSNFNTLKKICENYDGQ- 585
+R ++ + Q ++ S ++A G + +++ + +F + N G
Sbjct: 97 SIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSP 156
Query: 586 ----CLLEQSLFLQMGGMWMGLYYFL 651
CL E LF + G +MG Y L
Sbjct: 157 AAQTCLNEYHLFFLLTGAFMGYSYSL 182
>AL049745-2|CAI22180.1| 674|Homo sapiens transmembrane protein 48
protein.
Length = 674
Score = 42.3 bits (95), Expect = 0.001
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Frame = +1
Query: 238 CYCCYVVGFIQIDILHPVSWISSSINDVFGWKMSINIVLLGLVSFFQAYIYGCYYVKPLP 417
C +++ F +ID+ HP+ W+S S +D++ + +LL +V + I+ + +P
Sbjct: 39 CTTVFII-FSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIIS-IFNVEFYAVVP 96
Query: 418 KY-FTRFSMFLSLFCTQNIIFSILYALSGYFI--*VSILHWAKSNFNTLKKICENYDGQ- 585
+R ++ + Q ++ S ++A G + +++ + +F + N G
Sbjct: 97 SIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSP 156
Query: 586 ----CLLEQSLFLQMGGMWMGLYYFL 651
CL E LF + G +MG Y L
Sbjct: 157 AAQTCLNEYHLFFLLTGAFMGYSYSL 182
>AK001269-1|BAA91592.1| 674|Homo sapiens protein ( Homo sapiens
cDNA FLJ10407 fis, clone NT2RM4000520. ).
Length = 674
Score = 42.3 bits (95), Expect = 0.001
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Frame = +1
Query: 238 CYCCYVVGFIQIDILHPVSWISSSINDVFGWKMSINIVLLGLVSFFQAYIYGCYYVKPLP 417
C +++ F +ID+ HP+ W+S S +D++ + +LL +V + I+ + +P
Sbjct: 39 CTTVFII-FSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIIS-IFNVEFYAVVP 96
Query: 418 KY-FTRFSMFLSLFCTQNIIFSILYALSGYFI--*VSILHWAKSNFNTLKKICENYDGQ- 585
+R ++ + Q ++ S ++A G + +++ + +F + N G
Sbjct: 97 SIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSP 156
Query: 586 ----CLLEQSLFLQMGGMWMGLYYFL 651
CL E LF + G +MG Y L
Sbjct: 157 AAQTCLNEYHLFFLLTGAFMGYSYSL 182
>BC109310-1|AAI09311.1| 873|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
3 protein.
Length = 873
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 400 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 504
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
>BC109309-1|AAI09310.1| 873|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
3 protein.
Length = 873
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 400 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 504
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
>AY358852-1|AAQ89211.1| 385|Homo sapiens HSS3 protein.
Length = 385
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 400 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 504
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
>AF074924-1|AAD15978.1| 873|Homo sapiens heparan sulfate
N-deacetylase/N-sulfotransferase 3 protein.
Length = 873
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 400 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 504
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
>AC108201-1|AAY41001.1| 356|Homo sapiens unknown protein.
Length = 356
Score = 30.7 bits (66), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 400 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 504
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,725,085
Number of Sequences: 237096
Number of extensions: 2095171
Number of successful extensions: 2759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2753
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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