Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0997
         (667 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ141697-1|AAZ73088.1|  578|Drosophila melanogaster NDC1 protein.      39   0.007
AY061468-1|AAL29016.1|  578|Drosophila melanogaster LD42327p pro...    39   0.007
AE014297-3404|AAF56202.1|  578|Drosophila melanogaster CG5857-PA...    39   0.007
AY118994-1|AAM50854.1|  545|Drosophila melanogaster LP02775p pro...    30   3.3  
AE014297-2681|AAF55683.2|  545|Drosophila melanogaster CG16727-P...    30   3.3  

>DQ141697-1|AAZ73088.1|  578|Drosophila melanogaster NDC1 protein.
          Length = 578

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
 Frame = +1

Query: 262 FIQIDILHPVSWISSSINDVFGW-KMSINIVLLGLVSFFQAYIYGCYYVKPLPKYFTRFS 438
           F+   +LHP++W++ ++  V  W     +I L+  V  +   +  C       +Y     
Sbjct: 39  FVNFQLLHPLAWVTGTLRLVASWYTWFASIPLVASVVLYGVIL--CQQHLSERRYCPTRY 96

Query: 439 MFLSLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKKICENYDGQCLLEQSLFLQM 618
            +L  +  + ++F   + L G         +  +++  LK  C  Y   C+   +++L  
Sbjct: 97  RWLLHYGPRKVLFLFAHLLVGLLTAWLYTGYLHTDYQHLKYKC--YGQDCISAYNVYLLG 154

Query: 619 GGMWMGLYYFLN 654
            GM  G YYF++
Sbjct: 155 IGMTAGCYYFVS 166


>AY061468-1|AAL29016.1|  578|Drosophila melanogaster LD42327p
           protein.
          Length = 578

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
 Frame = +1

Query: 262 FIQIDILHPVSWISSSINDVFGW-KMSINIVLLGLVSFFQAYIYGCYYVKPLPKYFTRFS 438
           F+   +LHP++W++ ++  V  W     +I L+  V  +   +  C       +Y     
Sbjct: 39  FVNFQLLHPLAWVTGTLRLVASWYTWFASIPLVASVVLYGVIL--CQQHLSERRYCPTRY 96

Query: 439 MFLSLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKKICENYDGQCLLEQSLFLQM 618
            +L  +  + ++F   + L G         +  +++  LK  C  Y   C+   +++L  
Sbjct: 97  RWLLHYGPRKVLFLFAHLLVGLLTAWLYTGYLHTDYQHLKYKC--YGQDCISAYNVYLLG 154

Query: 619 GGMWMGLYYFLN 654
            GM  G YYF++
Sbjct: 155 IGMTAGCYYFVS 166


>AE014297-3404|AAF56202.1|  578|Drosophila melanogaster CG5857-PA
           protein.
          Length = 578

 Score = 38.7 bits (86), Expect = 0.007
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
 Frame = +1

Query: 262 FIQIDILHPVSWISSSINDVFGW-KMSINIVLLGLVSFFQAYIYGCYYVKPLPKYFTRFS 438
           F+   +LHP++W++ ++  V  W     +I L+  V  +   +  C       +Y     
Sbjct: 39  FVNFQLLHPLAWVTGTLRLVASWYTWFASIPLVASVVLYGVIL--CQQHLSERRYCPTRY 96

Query: 439 MFLSLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKKICENYDGQCLLEQSLFLQM 618
            +L  +  + ++F   + L G         +  +++  LK  C  Y   C+   +++L  
Sbjct: 97  RWLLHYGPRKVLFLFAHLLVGLLTAWLYTGYLHTDYQHLKYKC--YGQDCISAYNVYLLG 154

Query: 619 GGMWMGLYYFLN 654
            GM  G YYF++
Sbjct: 155 IGMTAGCYYFVS 166


>AY118994-1|AAM50854.1|  545|Drosophila melanogaster LP02775p
           protein.
          Length = 545

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 343 NIVLLGLVSFFQAY--IYGCYYVKPLPKYFTRFSMFL-SLFC 459
           NI ++GL S   A+  IY   Y KPLP  F    MFL +L C
Sbjct: 454 NIHVVGLASSSLAFYVIYLAQYYKPLPSIFISVLMFLGALLC 495


>AE014297-2681|AAF55683.2|  545|Drosophila melanogaster CG16727-PA
           protein.
          Length = 545

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 343 NIVLLGLVSFFQAY--IYGCYYVKPLPKYFTRFSMFL-SLFC 459
           NI ++GL S   A+  IY   Y KPLP  F    MFL +L C
Sbjct: 454 NIHVVGLASSSLAFYVIYLAQYYKPLPSIFISVLMFLGALLC 495


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,620,252
Number of Sequences: 53049
Number of extensions: 610018
Number of successful extensions: 1197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2868730650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)