Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0997
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016676-6|AAG24108.1|  354|Caenorhabditis elegans Seven tm rece...    30   1.7  
AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm rece...    27   9.1  
AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    27   9.1  
AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    27   9.1  
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    27   9.1  
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       27   9.1  

>AF016676-6|AAG24108.1|  354|Caenorhabditis elegans Seven tm
           receptor protein 253 protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 352 LLGLVSFFQAYIYGCYYVKPLPKYFTRFSMFLSLFCTQNIIF 477
           L+  ++FF+   Y   YV   P +FT+ S FL +  T+N IF
Sbjct: 50  LMVYIAFFEL-AYAGLYVAEKPTFFTKDSAFLLITNTKNSIF 90


>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +1

Query: 298 ISSSINDVFGWKMSINIVLLG-LVSF----FQAYIYGCYYVKPLPK 420
           +   +ND  GW  S N++ L  L+SF    F A+  G  Y +P PK
Sbjct: 25  VKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACGYDYYEPFPK 70


>Z66495-3|CAA91270.2|  484|Caenorhabditis elegans Hypothetical
           protein C36A4.4 protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 531 PMKNRDSYEIATQGVQNAKYNILSA-K*TQEHREPGKILW 415
           P+    S+  +  G+Q AK  +L A    +EH+ PGKI W
Sbjct: 125 PLGINASFGDSLLGIQAAKIALLQALAGEREHQNPGKIHW 164


>AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 112 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 21/66 (31%), Positives = 37/66 (56%)
 Frame = +1

Query: 322 FGWKMSINIVLLGLVSFFQAYIYGCYYVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSG 501
           F   +SINI+LLGL+   +    G Y  K L  +F+ FS+F ++   ++I+  I++  + 
Sbjct: 18  FTLTISINIILLGLIR-TRGKTLGTY--KYLMSFFSFFSIFYAI--VESILRPIMHIENT 72

Query: 502 YFI*VS 519
            F  +S
Sbjct: 73  TFFLIS 78


>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 282 KNINLYETHHITAITACSPIFHKTDIISL 196
           KNI L E HH+  I   + +F+K D+I +
Sbjct: 153 KNIRL-EKHHLKQILKSANVFYKNDVIRI 180


>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 361 LVSFFQAYIYGCYYVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGYFI 510
           ++S+F  +I   +   PL +    +S FLS+F     +F + Y LS  ++
Sbjct: 112 ILSYFVIFISLMFLTLPLSRLIRMYSHFLSVF-----LFGVAYKLSAIYV 156


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 282 KNINLYETHHITAITACSPIFHKTDIISL 196
           KNI L E HH+  I   + +F+K D+I +
Sbjct: 153 KNIRL-EKHHLKQILKSANVFYKNDVIRI 180


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 282 KNINLYETHHITAITACSPIFHKTDIISL 196
           KNI L E HH+  I   + +F+K D+I +
Sbjct: 153 KNIRL-EKHHLKQILKSANVFYKNDVIRI 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,909,074
Number of Sequences: 27780
Number of extensions: 346878
Number of successful extensions: 777
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)