Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0997
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          29   0.030
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      29   0.030
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.5  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   4.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 433 FSMFL-SLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKKICENYDGQCLLEQSLF 609
           FS++   L    + +F + Y    + I      WAK+N N  + I   Y        + F
Sbjct: 97  FSLYYPQLLREMSALFKLFYHAKDFDIFFKTALWAKNNINEAQYIYSLYTAVITRPDTKF 156

Query: 610 LQMGGMW-MGLYYFLNA 657
           +Q+  ++ M  Y+F N+
Sbjct: 157 IQLPPLYEMCPYFFFNS 173


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 433 FSMFL-SLFCTQNIIFSILYALSGYFI*VSILHWAKSNFNTLKKICENYDGQCLLEQSLF 609
           FS++   L    + +F + Y    + I      WAK+N N  + I   Y        + F
Sbjct: 97  FSLYYPQLLREMSALFKLFYHAKDFDIFFKTALWAKNNINEAQYIYSLYTAVITRPDTKF 156

Query: 610 LQMGGMW-MGLYYFLNA 657
           +Q+  ++ M  Y+F N+
Sbjct: 157 IQLPPLYEMCPYFFFNS 173


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 322 FGWKMSINIVLLGLVS 369
           FGW+M   IV++ LVS
Sbjct: 397 FGWQMICLIVVIALVS 412


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 90  TFRDNFVLTGLFHRFELCNEIQ*PTEW 170
           T   + ++ GLF+ F L   ++  ++W
Sbjct: 52  TCGSHIIIVGLFYEFGLITHVKLSSDW 78


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 486 VRPEWLFHMSLY 521
           +RP+WLF+++ Y
Sbjct: 229 LRPDWLFNLTKY 240


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 121 RPVSTKLSRNVTVIFILI 68
           RP+  KLSR   ++FI++
Sbjct: 151 RPLDGKLSRGQVILFIVL 168


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 313 NDVFGWKMSINIVLLGLVSFFQ 378
           ++V  WK   +I LLGL    Q
Sbjct: 103 DEVLDWKKIFDINLLGLTCMIQ 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,256
Number of Sequences: 438
Number of extensions: 4788
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)