Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0996
(691 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 36 0.007
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.029
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 30 0.27
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 5.9
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 5.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 7.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 7.8
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual 25 7.8
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 536 TITTWPTGPTASKDLRPNGPWQPAKYDNDVLFFMYNREYNEALVLSRPT 682
T + P P +SKD+RP PW P + D +L + +N V SR T
Sbjct: 692 TFSVRPPYPPSSKDIRPEAPWLPEE-DELLLLLLRRYSFNWEFVASRLT 739
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 33.5 bits (73), Expect = 0.029
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 52 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 231
+PT S TP S TTA+S T PL N +T T A S+ +S NS TT +A
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS--TTATSAS 469
Query: 232 STP-TSYGS 255
STP TS S
Sbjct: 470 STPLTSVNS 478
Score = 29.1 bits (62), Expect = 0.63
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +1
Query: 52 MPTKPQSPTPNSK---TIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR* 222
+P+ S TP S T T+ASS P+T++ ST T A S+ +S +S +T
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSV------NSTTTTSASSTPLSSVSSANSTTA 335
Query: 223 TAW-STPTS 246
T+ STP S
Sbjct: 336 TSTSSTPLS 344
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 85 SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSRL 261
+ T T+ASS P+T++ A ++ T + S T++ T +A S T TS S
Sbjct: 347 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTA 406
Query: 262 QRYR-PGVLP 288
Y VLP
Sbjct: 407 PSYNTSSVLP 416
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 85 SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS-TPTSYGSRL 261
+ T T+ASS P+T++ A ++ T + S T++ T +A S T TS S
Sbjct: 461 NSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTA 520
Query: 262 QRYR-PGVLP 288
Y VLP
Sbjct: 521 PSYNTSSVLP 530
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 52 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 165
+PT S TP S TTA+S T PL N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 138 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLK 257
+K I + +KS + ++ K+++ NK+N +E A Q W K
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSK 171
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +3
Query: 45 SLYANETSVSDSKLEDDLY-----NSILVADYDHSVEKSKQIYEDKKSEVITNV 191
+L N S K++D L+ N L +HS K K+ YE S ++TN+
Sbjct: 738 NLMENVEEESIDKIKDILFDIHVDNLYLFPQLEHSFYKRKKNYEKALSVLVTNI 791
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.8 bits (54), Expect = 5.9
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -1
Query: 544 GYGSGLF---ELPT-SILITLSVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIVA 377
G+ SGLF ELP+ ++L LS+ +D + + + W IA+G S +
Sbjct: 272 GFSSGLFGIYELPSFTMLYQLSITQSNIDTLTVNSTGD-----W------IAIGSSKLGQ 320
Query: 376 VLIVQRQSETVALVHQ 329
+L+ + QSE+ L Q
Sbjct: 321 LLVWEWQSESYVLKQQ 336
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 84 LEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNN 215
LE+D + ++ + ++ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +1
Query: 52 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 231
+PT + T ++T TTA+ + TT A T+ +Q T + ET TA
Sbjct: 1147 LPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQA--TTATETQATTAT 1204
Query: 232 STPTSYGS 255
T+ G+
Sbjct: 1205 EVQTTTGA 1212
>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 542 TTWPTGPTASKDLRPNGPW 598
T WP PTASK L P W
Sbjct: 131 TWWPLAPTASKWLIPYLAW 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,854
Number of Sequences: 5004
Number of extensions: 46689
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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