Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0996
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0693 - 26334574-26336121                                         30   1.5  
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578...    29   2.6  
02_04_0362 - 22366668-22367516                                         29   3.5  
11_06_0232 + 21559467-21559532,21559586-21560200                       29   4.6  
11_03_0178 + 11280174-11280342,11280429-11280497,11281494-112817...    29   4.6  
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530...    28   8.0  
04_04_0143 - 23091613-23092467                                         28   8.0  

>11_06_0693 - 26334574-26336121
          Length = 515

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 4   R*KPFKLFCVFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKR 144
           R +P +L   F+ R C+P+ P SP  +S       SS P   +PL R
Sbjct: 40  RRRPLELLA-FAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLR 85


>04_04_1267 - 32257035-32257337,32257423-32257570,32257656-32257893,
            32257994-32258351,32258791-32258969,32259071-32259175,
            32259539-32260871
          Length = 887

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +1

Query: 22   LFCVFSWRLCMPTKPQSPTPNSKTIF---TTASSLPITTIPLKRANRSTRTRRAKSSQMS 192
            L C+    LC+   P +  P S  +F     A++LP    P+  A+R++  +++  +  S
Sbjct: 815  LLCIHIGLLCVQDNPNNRPPMSSVVFMLENEAAALPAPIQPVYFAHRASGAKQSGGNTSS 874

Query: 193  *TNSYETT 216
              N+   T
Sbjct: 875  SNNNMSLT 882


>02_04_0362 - 22366668-22367516
          Length = 282

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/84 (27%), Positives = 44/84 (52%)
 Frame = +1

Query: 316 KQH*ADVQARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHS 495
           K+  A  +A RSRF V R EQ+R +  + R +G+ E+ ++L   ++     GL++     
Sbjct: 191 KKQVAQQEAERSRFLVARAEQER-RAAIVRAEGESEA-ARLISEATAAAGTGLIELRRIE 248

Query: 496 A*SVLTLAVQTTPNHNHMAYGANS 567
           A   +   +  +PN +++  G +S
Sbjct: 249 AAKEIAGELARSPNVSYIPAGDSS 272


>11_06_0232 + 21559467-21559532,21559586-21560200
          Length = 226

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 70  SPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYET 213
           +P P ++T    ASS P  T P +  +R  R RRA+++Q    +S  T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186


>11_03_0178 +
           11280174-11280342,11280429-11280497,11281494-11281703,
           11282314-11282435,11282436-11282633
          Length = 255

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 652 VFAIVHEEQNVVVVLSGLPGSIGP*ILRRCWPRRPCG 542
           V A+V+  +N++  L  L G + P +LRR  PR+  G
Sbjct: 73  VNALVYNTKNMISKLQTLEGGVSPPVLRRREPRQGPG 109


>06_03_0948 -
           26252230-26252460,26252567-26252614,26252703-26253041,
           26253132-26253260,26255404-26255967
          Length = 436

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
 Frame = -1

Query: 499 TLSVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIV----AVLIVQRQ------SE 350
           T SV  LEVD   + +R ELPA    RL+  + V  S I+    A+++   Q      ++
Sbjct: 77  TASVQTLEVDKATMMRRCELPARD-LRLLDPLFVYPSTILGRERAIVVNLEQIRCVITAD 135

Query: 349 TVALVHQLNVVFCEYKSELNREAL 278
            V L++ L+    +Y +EL R  L
Sbjct: 136 EVLLLNSLDSYVLQYAAELQRRLL 159


>04_04_0143 - 23091613-23092467
          Length = 284

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/83 (26%), Positives = 42/83 (50%)
 Frame = +1

Query: 316 KQH*ADVQARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHS 495
           K+  A  +A RS+F V + EQ+R +  + R +G+ ES ++L   ++     GL++     
Sbjct: 190 KKQVAQQEAERSKFLVAKAEQER-RAAIVRAEGESES-ARLISEATAAAGTGLIELRRIE 247

Query: 496 A*SVLTLAVQTTPNHNHMAYGAN 564
           A   +   +  +PN  ++  G N
Sbjct: 248 AAREIAAELARSPNVAYVPAGDN 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,986,834
Number of Sequences: 37544
Number of extensions: 307578
Number of successful extensions: 1038
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)